Transcript Information: R_Transcript_23239.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5184976006472
Replicate 21.0694210738352
Replicate 31.1667268724696
Condition 2: 8 Hour
Replicate 11.5797332224029
Replicate 20.53149804036774
Replicate 31.4176130535447
Condition 3: 24 Hour
Replicate 11.8319472660477
Replicate 21.1608030995041
Replicate 31.3749491908577


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23239.p1 GENE.R_Transcript_23239~~R_Transcript_23239.p1 ORF type:3prime_partial len:589 (+),score=64.34,UBN2_3|PF14244.2|0.00013,UBN2_3|PF14244.2|5.8e-14,UBN2|PF14223.2|5.4e-20,gag_pre-integrs|PF13976.2|3e+03,gag_pre-integrs|PF13976.2|1.6e+04,gag_pre-integrs|PF13976.2|1.3e-11,UBN2_2|PF14227.2|6.1e-10 R_Transcript_23239:40-1803(+)
ATGTATTCTATGTATAAATATATACAATATATCACAGGGGTATATGCATCCCATTCTCCCAAATTTCTCTATTTTATATGGTATCAGAGCTTGCTAGGACAAACGTCCATGGCTATCTCAAACACAAACCTATTGCTCACAGCCTCAAACACTTTGGGGATCACTTCATTTCCCACTTTATCAATCAAATTAGACAGAGAAAATTATTTCCTATGGTGTAATAATGTCAAATCTGCACTTGAAGCCTTTGAATTAGATGGCTTCATTACTGGAGTCGTTGTACCTCCGCCTGCTGAGATTCAAATCTCAGTTGAAGGTGACCTATCACAACCCTCACCAAATCCTGATTATATTACTTGGAGAAAGAAGGATAAGCTAGTCCTTCTATGGCTCAAAAGTACTATCACCGAACGCATACTCAACAACATAGCGCGGGCAACAACCGCACGAGATGCTTGGGTGACTCTTGAAAAAATCTTCCAATCCCAATCACGGGCAAGAGTGATGCAGATGCGGTGGAATCTTCAGACAATGGAAAAGGGATCTTTGTCGATCCTGGAATATATCGAAAAGAAACGAACACTGGCAGATACTCTAGCTTCTACTTCGAACCCGATTTCCGATGATGATCTTGTGAATTTCATTCTCTTTGGTCTAGATGAAGATTATTCCCCTTTTCGTTCCTCCATCAACACTCGTGTGGAGCCTGTTTCTGTAGATGAGCTGCTGGGTATGCTTCTCCAAGAGGAGGAAAGAATTCAACACTCACGAAAAGCACTCATGTCAGCAAATATCATCGTCAAAGGTGGGTCTCAGCGCAATATGACTTCACATGGGAACCAGTTTGGTAAGAATACCTCCTCCTACACAAATAAGACCAAATCTAACAATTTTAAAGGCAATACTTATGGTGGGAATCAATCTGGGTCCCTCAAAAATGGATCGAACAAACCACGGATTGTTTGCCAAATTTGCTCAAAACCCGGTCATACAGCACTTCAGTGTTACAATCGTTTCAATCATGCCTTTACCCCTGAAAAGCCATCAAAGCTCTCTGCTCTCATTGCCTCTTCTGACACCCCTTCGGATCCGTCATGGTACATTGATTCAGGTGCCACAAATCATCTAACAGCAGATCTGAACAATCTTTCAATGCACTCCCCATTTACTGGAGATGATCAAATTGAAGTTGGTAATGGTATGGGTCTCTCAATTTCTCATATTGGACATTCTAGTCTTAAGAGCCATGGTGATTCTTTGCTTCTGAAAAATATTTTACATGTGCCAAAAATCACCAAAAATCTTTTAAGTGTATCACAATTTACTCGTGACAATAATGTTTCCATGGAATTTTATCCTAATATTTGTCTTGTTAAGGATATGCAGGGAAGAGTGGTACTTCGGGGGATGCTTGATCGAGGTCTCTATAAGCTGAATGATGATCCTTCTACTTTACCCAAACCAAACACTGTCTCGTCCTATGCATTCGTTGGTGAACGAACCTCTCTTCAAGGGTGGCATGATCGTCTTGGTCACCCAAGTTCAACAATAGTTCGTAGGATAGTTTCTACCTTTAATCTTCCCTTAGATTCAAATAAAGAGTTGCCCCTTTGTGGTCCTTGTCAAATGGGAAAGAGTCATCGTCTTCATTTACCTCATTCTTCTGAGTCTTTGTTTGATCTAGTATACTCAGATGTATGGGGACCAGCACCTGTTCCTTCAAATAATGGAAGTGTCTACTTTATTCAGTTTCTTGATGACTGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23239.p1 GENE.R_Transcript_23239~~R_Transcript_23239.p1 ORF type:3prime_partial len:589 (+),score=64.34,UBN2_3|PF14244.2|0.00013,UBN2_3|PF14244.2|5.8e-14,UBN2|PF14223.2|5.4e-20,gag_pre-integrs|PF13976.2|3e+03,gag_pre-integrs|PF13976.2|1.6e+04,gag_pre-integrs|PF13976.2|1.3e-11,UBN2_2|PF14227.2|6.1e-10 R_Transcript_23239:40-1803(+)
MYSMYKYIQYITGVYASHSPKFLYFIWYQSLLGQTSMAISNTNLLLTASNTLGITSFPTLSIKLDRENYFLWCNNVKSALEAFELDGFITGVVVPPPAEIQISVEGDLSQPSPNPDYITWRKKDKLVLLWLKSTITERILNNIARATTARDAWVTLEKIFQSQSRARVMQMRWNLQTMEKGSLSILEYIEKKRTLADTLASTSNPISDDDLVNFILFGLDEDYSPFRSSINTRVEPVSVDELLGMLLQEEERIQHSRKALMSANIIVKGGSQRNMTSHGNQFGKNTSSYTNKTKSNNFKGNTYGGNQSGSLKNGSNKPRIVCQICSKPGHTALQCYNRFNHAFTPEKPSKLSALIASSDTPSDPSWYIDSGATNHLTADLNNLSMHSPFTGDDQIEVGNGMGLSISHIGHSSLKSHGDSLLLKNILHVPKITKNLLSVSQFTRDNNVSMEFYPNICLVKDMQGRVVLRGMLDRGLYKLNDDPSTLPKPNTVSSYAFVGERTSLQGWHDRLGHPSSTIVRRIVSTFNLPLDSNKELPLCGPCQMGKSHRLHLPHSSESLFDLVYSDVWGPAPVPSNNGSVYFIQFLDDC

Click here to download the sequence:
Link to NCBI Protein BLAST