Transcript Information: R_Transcript_23247.p3


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value1E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.48352214449586
Replicate 20
Replicate 30.75850124490571
Condition 2: 8 Hour
Replicate 10.32431609201649
Replicate 20.14808531020653
Replicate 30.24041868371374
Condition 3: 24 Hour
Replicate 10.60815383384647
Replicate 20.29212263431228
Replicate 30.28990337333639


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23247.p3 GENE.R_Transcript_23247~~R_Transcript_23247.p3 ORF type:complete len:151 (+),score=14.11,UBN2_3|PF14244.2|6e-17 R_Transcript_23247:3048-3500(+)
ATGGCTATCTCAAACACAAACCTATTGCTCACAGCCTCAAACACTTTGGGGATCACTTCATTTCCCACTTTATCAATCAAATTAGACAGAGAAAATTATTTCCTATGGTGTAATAATGTCAAATCTGCACTTGAAGCCTTTGAATTAGATGGCTTCATTACTGGAGCCATTGTACCTCCGCCTGCTGAGATTCAAATCTCAGTTGAAGATGACCTATCACAGCCCTCACCAAATCCTGATTATATTACTTGGAGAAAGAAGGATAAGCTAGTCCTTCTATGGCTCAAAAGTACTATCACCGAACGCATACTCAACAACATAGCGCGGGCAACAACCGCACGAGATGCTTGGGTGACTCTTGAAAAAATCTTCCAATCCCAATCACGGGCAAGAGTGATGCAGATGCGGTGGAATCTTCAGACAATGGAGAATGGGATGCATTTGCCCCTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23247.p3 GENE.R_Transcript_23247~~R_Transcript_23247.p3 ORF type:complete len:151 (+),score=14.11,UBN2_3|PF14244.2|6e-17 R_Transcript_23247:3048-3500(+)
MAISNTNLLLTASNTLGITSFPTLSIKLDRENYFLWCNNVKSALEAFELDGFITGAIVPPPAEIQISVEDDLSQPSPNPDYITWRKKDKLVLLWLKSTITERILNNIARATTARDAWVTLEKIFQSQSRARVMQMRWNLQTMENGMHLPL*

Click here to download the sequence:
Link to NCBI Protein BLAST