Transcript Information: R_Transcript_23254.p1


Annotated TAIR IDAT5G20600.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6966345-6967943 | Reverse length=532
E-Value1.6E-130
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.971717406974
Replicate 219.904638349593
Replicate 323.10523618884
Condition 2: 8 Hour
Replicate 119.435920530049
Replicate 217.51667000384
Replicate 323.719782335826
Condition 3: 24 Hour
Replicate 130.000323482996
Replicate 226.795037231013
Replicate 328.336421839016


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23254.p1 GENE.R_Transcript_23254~~R_Transcript_23254.p1 ORF type:complete len:577 (+),score=151.63,Nop52|PF05997.8|7.3e-54 R_Transcript_23254:73-1731(+)
ATGGAAACAACAACAACAACAGAAGACCCAACACCCAAAACAGGCTCCAATAAACTCATAAGGGGTTTAGCCTCATGCAATTCCACCCTCAGATCCAAATCCCTAAAAGCCCTTCTCACTTGGCTCCCTTCCCAAGCCCTAATTCCTGATGACGACCTCAAAAAGCTTTGGAAATCCCTCTTTTACTGTATGTGGCATTCTGACAAGATCCAAAACCAAACCCATCTCATCAATCTACTTTCCTCCCTTCTCCCTAATCTAAACCCTAATCTTTCTCTCTCTTACTTCTCCATTTTCCTCGTTACTATGCGCAGGGAATGGCCCGGTATTGACCATCTCAGGTTAGACAAGTTTTATCTTTTAATGCGTTCATTTGTGAGAAATTTGCTTGTTTTGCTCAAGAATAAGAATTGGGATTTGGGGGTTTTGGAGAGTTTTGTTGGGGTTTTGGAAAACAGGGCTTTTTTGGTTTGTGATGATGTTAATGACAATGGGTTGGGTAATGGTGTCACTTATCATATTGTTTCTGTTTTTTGTGATGAGATTAAACCCTTTTTGCCCTTGAGTTTTGATGTCTTGAATTTGTTGTTTAGGCCCTTTTTTGGGGTTTTGGGTAAGAGTGAGAATAGGGTTTTGGTGGGTAAGGTTAAAAGTTGTGTTTTTGATTGTTTGCTTAAGAACGGCAAGGCTTTGTTGAGTGTTAGAAAGGATAATGGTAGTAATAATGAGGAGGAGATTGATGAGAAGAGTGAGGTGGTTTTGTTCGGGACTATAGCGTTGGCTATGGGGTTTTCGACCAGGTTTTATGAGTTGGGTTCGGGTTCGGATTGTGTTCAAGGGAATAGGAAGGTTTTGTTTGGTTTACATGAGGAGTTTTCGAGGTTGGAGAAGGAGAAGGGTTCGCTTGGGATTGAGGTTTCGCTTCCTGAGGGTAGTAATGTTGTTGGCCAGGATGACAGGGAGGTGTCCCAATTGATCCCTGTTAATGGTGAGTCTAAAGCTTCGAAAGATAAGAAGAAGTCTAAGAAGAAGAAAAAGAAGAAGAATGAAGTTGCTGTTGAAGATGGGTCAAGTGGGAGCGGTAGTAATGGGGATATAGAAATGGTTAGTTCAAATGATGGTGATTCGAATGCTGAACCAGAAGATGGAGAGGATGCCCTTGAACTTGACGATAACACGATGTCTAACCTTCAAAAGCAGTTCGAGAAGATTGCTGCCGAGTCTGGTTTGGATGGTGATGGTGAGAGTGCACTTGAAACTCCTCCCACAGTGGTTCAAGTCAATGGTAAGGCAAAGAAGCGCAAGAGATCAAAGTCAGTGGTTGGTGCTGAAACAGCTGAGAAAGAAGTTGCGGAAGAAGAAGGTGCCCCCAAGACAGAGGAAAAAAGTGGCAAGAAAGTTAGGTTTTCAATGAAGAATAATCTCATTTGGAAGCCACATAGTCCCTTGCCTCCACAGAGTTTGAGAATACCTCCATCTGTTACCCCTAGGGGCAGCGCTCTTAAGCCTGTTGTATCTCCTGGACCTATCAGAGACACATCGAAAGACACCAAGAAAGCAAAGAAGAAGAAGGCTAGTCCTATGAAGAAAGCCAGAAAAGTGAAGACCATATCTCCTGCAGTTAAACGTGTGAAGAAGGTTAAGCAGATGTCTGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23254.p1 GENE.R_Transcript_23254~~R_Transcript_23254.p1 ORF type:complete len:577 (+),score=151.63,Nop52|PF05997.8|7.3e-54 R_Transcript_23254:73-1731(+)
METTTTTEDPTPKTGSNKLIRGLASCNSTLRSKSLKALLTWLPSQALIPDDDLKKLWKSLFYCMWHSDKIQNQTHLINLLSSLLPNLNPNLSLSYFSIFLVTMRREWPGIDHLRLDKFYLLMRSFVRNLLVLLKNKNWDLGVLESFVGVLENRAFLVCDDVNDNGLGNGVTYHIVSVFCDEIKPFLPLSFDVLNLLFRPFFGVLGKSENRVLVGKVKSCVFDCLLKNGKALLSVRKDNGSNNEEEIDEKSEVVLFGTIALAMGFSTRFYELGSGSDCVQGNRKVLFGLHEEFSRLEKEKGSLGIEVSLPEGSNVVGQDDREVSQLIPVNGESKASKDKKKSKKKKKKKNEVAVEDGSSGSGSNGDIEMVSSNDGDSNAEPEDGEDALELDDNTMSNLQKQFEKIAAESGLDGDGESALETPPTVVQVNGKAKKRKRSKSVVGAETAEKEVAEEEGAPKTEEKSGKKVRFSMKNNLIWKPHSPLPPQSLRIPPSVTPRGSALKPVVSPGPIRDTSKDTKKAKKKKASPMKKARKVKTISPAVKRVKKVKQMSA*

Click here to download the sequence:
Link to NCBI Protein BLAST