Transcript Information: R_Transcript_232706.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.85355572809836
Replicate 20.60421008392225
Replicate 30.98878004012169
Condition 2: 8 Hour
Replicate 10.6165505562256
Replicate 20.48260896060113
Replicate 30.65293563382687
Condition 3: 24 Hour
Replicate 10.82582040387425
Replicate 20.55534824544619
Replicate 30.55112925470605


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_232706.p1 GENE.R_Transcript_232706~~R_Transcript_232706.p1 ORF type:5prime_partial len:278 (+),score=69.64,UBN2_3|PF14244.2|9e-12,Retrotrans_gag|PF03732.13|1.5e-07,UBN2|PF14223.2|0.0003,UBN2|PF14223.2|6.5 R_Transcript_232706:1-834(+)
TCCATTATGTATATGGATTCAGCCAAGAACATTTGGAACAATCTGTGCACTAGGTTCACTGTGAGTAATGGTTCAAGGAAATACAAACTTAACAAGGATACTTATGAGATTAAGCAAAATGGTAGAACCATCTCAGAGTATTATACTGAGCTGCAGGTTGTGTGGGAAGAGTTGGAGGCCTTGAATGATTATCCTTCTATTCTAAATATGACAGCTGAGATTATGACTTACATAAAAGCTATTGAAAGTCAGAAGGAAGAAATGAGGCTGTTTCAGTTCCTAAATGGCCTGGATTCTAAATATGGAGTCATGAGGAGCAATATTCTTATAATGGATCCACTGCCTGGAGTGGAGGCTGCTGTAGCGATCTTACAGCAAGAGGAAGGACAAGATGAGATGTTGGTAGAAGCAAAAGAGGAAAAGGAAGCTTCAGCCTTCTTCAGTAAAGGGGAAAACAGTCTCTCTGTTACTTGTAGTGCTTGTGGTGTGAAGGGGCACACAAAAGAAAAATGTTGGACTATTGTGGGTTATCCACCTTGGCATCCCAAAGGAAAGAAAGGGAATACAACTCCGAGAGGTCAGTCTGCTGGACCAAGTAGTCCACAATACATACAACAAGGCAGGGGTAGGTTTCATCAGAAACCTTACTCTCCTCCTCCTAAGAAGATTGCAGCCAATGCTCAGAAGCACAGTGATGAGTTGAATGCAGCCATAACCATGCTGGGTAACTTATTCAAGCTTGCACAACCAGCCCACTCAGGACAAAAATCTGGAATTGAGACTGATGAAGAGCTGGACACTCACTGTGCAGGATTGCATAACCAAGAATATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_232706.p1 GENE.R_Transcript_232706~~R_Transcript_232706.p1 ORF type:5prime_partial len:278 (+),score=69.64,UBN2_3|PF14244.2|9e-12,Retrotrans_gag|PF03732.13|1.5e-07,UBN2|PF14223.2|0.0003,UBN2|PF14223.2|6.5 R_Transcript_232706:1-834(+)
SIMYMDSAKNIWNNLCTRFTVSNGSRKYKLNKDTYEIKQNGRTISEYYTELQVVWEELEALNDYPSILNMTAEIMTYIKAIESQKEEMRLFQFLNGLDSKYGVMRSNILIMDPLPGVEAAVAILQQEEGQDEMLVEAKEEKEASAFFSKGENSLSVTCSACGVKGHTKEKCWTIVGYPPWHPKGKKGNTTPRGQSAGPSSPQYIQQGRGRFHQKPYSPPPKKIAANAQKHSDELNAAITMLGNLFKLAQPAHSGQKSGIETDEELDTHCAGLHNQEY*

Click here to download the sequence:
Link to NCBI Protein BLAST