Transcript Information: R_Transcript_232707.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.74249332697161
Replicate 20.49821729801385
Replicate 30.54354970567141
Condition 2: 8 Hour
Replicate 10.08300293202456
Replicate 20.45479759676988
Replicate 30.36918530075363
Condition 3: 24 Hour
Replicate 10.3112923013926
Replicate 20.52334512621709
Replicate 30.66776048197314


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_232707.p1 GENE.R_Transcript_232707~~R_Transcript_232707.p1 ORF type:5prime_partial len:295 (+),score=64.13,UBN2_3|PF14244.2|9.5e-12,UBN2_3|PF14244.2|6.3e+03,Retrotrans_gag|PF03732.13|1.8e-07,UBN2|PF14223.2|0.00034,UBN2|PF14223.2|0.86 R_Transcript_232707:1-885(+)
TCCATTATGTATATGGATTCAGCCAAGAACATTTGGAACAATCTGTGCACTAGGTTCACTGTGAGTAATGGTTCAAGGAAATACAAACTTAACAAGGATACTTATGAGATTAAGCAAAATGGTAGAACCATCTCAGAGTATTATACTGAGCTGCAGGTTGTGTGGGAAGAGTTGGAGGCTTTAAATGATTATCCTTCTATTCTGAATATGACAACTGAGATTGTGACTTACATAAAGGCTATTGAAAGTGAGAAGGAAGAAATGAGGTTGTTTCAGTTCCTAAATGGCCTGGATTCTAAATATGGAGTCATGAGGAGCAATATTCTTATAATGGATCCACTGCCTGGAGTGGAGGCTGCTGTAGCGATCTTACAGCAAGAGGAAGGACAAGATGAGATGTTGGTAGAAGCAAAAGAGGAAAAGGAAGCTTCAGCCCTCTTCAGTAAAGGGGAAAACAGCCTCTTTGTGACTTGCAGTGCTTGTGGTGTGAAGGGGCACACAAAAGAAAAATGTTGGACTATTGTGGGTTATCCACCTTGGCATCCCAAAGGAAAGAAAGGGATTACAACTCCGAGAGGTCAGTCTGTTGGACCAAGTAGACCACAATACATACAGCAAGGCAGGGGAAGGATTCATCAGAAATCTTACTCTCCTCCTCCTAAGAAAGTTGCAGCCAATGCTCAGAAGCACAGTGATGAGGTTAATGCAGCTAAAACCATGCTAGGTAACCTAACAAGCTTGCACCACCAACCAACTCAGGACAAAAATCTGGAACTGAGACTGATGAAGAGTTGGACACTCAGTTTGCAGGTATGGCTGTATGTTGTAATGTTCTTTGTAAATCTAATGAGTGGATTATTGACTCTGGTGCTTCTGACCATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_232707.p1 GENE.R_Transcript_232707~~R_Transcript_232707.p1 ORF type:5prime_partial len:295 (+),score=64.13,UBN2_3|PF14244.2|9.5e-12,UBN2_3|PF14244.2|6.3e+03,Retrotrans_gag|PF03732.13|1.8e-07,UBN2|PF14223.2|0.00034,UBN2|PF14223.2|0.86 R_Transcript_232707:1-885(+)
SIMYMDSAKNIWNNLCTRFTVSNGSRKYKLNKDTYEIKQNGRTISEYYTELQVVWEELEALNDYPSILNMTTEIVTYIKAIESEKEEMRLFQFLNGLDSKYGVMRSNILIMDPLPGVEAAVAILQQEEGQDEMLVEAKEEKEASALFSKGENSLFVTCSACGVKGHTKEKCWTIVGYPPWHPKGKKGITTPRGQSVGPSRPQYIQQGRGRIHQKSYSPPPKKVAANAQKHSDEVNAAKTMLGNLTSLHHQPTQDKNLELRLMKSWTLSLQVWLYVVMFFVNLMSGLLTLVLLTI*

Click here to download the sequence:
Link to NCBI Protein BLAST