Transcript Information: R_Transcript_232866.p1


Annotated TAIR IDAT5G61370.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24672008-24673471 | Reverse length=487
E-Value6E-195
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.41742738150084
Replicate 20.43651352216836
Replicate 30.42860839577
Condition 2: 8 Hour
Replicate 10.61087396957784
Replicate 20.27892991901687
Replicate 30.94343090542552
Condition 3: 24 Hour
Replicate 10.85912792120306
Replicate 20.32097050360508
Replicate 30.86458708742422


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_232866.p1 GENE.R_Transcript_232866~~R_Transcript_232866.p1 ORF type:complete len:481 (+),score=86.45,PPR_2|PF13041.2|32,PPR_2|PF13041.2|3e+02,PPR_2|PF13041.2|9.2e+02,PPR_2|PF13041.2|8e-06,PPR_2|PF13041.2|8.2e-06,PPR_2|PF13041.2|4.5e-11,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|1.4,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.89,PPR|PF01535.16|4.2e+02,PPR|PF01535.16|0.33,PPR|PF01535.16|7.7e+02,PPR|PF01535.16|83,PPR|PF01535.16|9.3e-07,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|39,PPR|PF01535.16|0.004,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|4.1,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|3.4e+02,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|4.7e+02,PPR_1|PF12854.3|5.2e+03,PPR_1|PF12854.3|26,PPR_1|PF12854.3|10,PPR_1|PF12854.3|15,PPR_1|PF12854.3|7.3e+02,PPR_1|PF12854.3|0.00039,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|83,PPR_1|PF12854.3|0.39 R_Transcript_232866:202-1644(+)
ATGCTGAAAAAGTTCAACACCTTCAAGTTAAAGCACTTACCTTTAGCTCTATACAGCACATTGTCACATGGGCTTCTCCAGGAGCTCTGCACCCTTGTATCGACCCCGATAGGCGGCTTCGATGAGTTAGAATCCAACCTTAGTGAACATCAAGTCTCTTTAACACCATCCCTTGTAGTACAAGTTGTGAACCATTGCAAGGAGGAGGCCCCCACGAGGCGGTTGCTTCGGTTCTTCACATGGTCATGCAAGAGTTTGGGTGGTACATTGGGGGATAAGGAGTTTAATCATGCGGTTCGAGTGTTTGCTGAGAAGAAGGATCATAGAGCTATTGACATATTGTTAGATGATCTTAGGAAAGATGGAAGAACATTGGAGCCTCAAACCTTTAGCATTGTGGCTGAAGTGTTTGTAAAGTTGGGTAGAGAAGATGATGCGTTGGGTATATTTAAGAACTTGGAATCATTCAAGTGCGTACAAGATAGGACTTGTGTTGAAGCTATTGTCAATGCACTTTGTGCTAAGGGCCATGCTAAGAGAGCTGAAGGGGTGGTGTGGCATCATAGGGATAAGTTATTAGGTGTTGAGTCTCATGTTTATAGGAGTGTATTGTATGGATGGTCTATGCACGCGAATGTTAAGGAAGCTCGAAGGGTTCTCCAAGAAATGAAGTCGAAGAAGATTAGTCTTGATCTTTATTGCTTTAATACCTTCCTAAGGTGTCTTTGCGAGCATAATGTTAGGAATAACCCGTCTGGGCTTGTTCCTGAAGCTTTGAATGTGATGATGGAGATGAGAACCTACAAAGTTATTCCAAATTCGATAACTTATAATGTTCTGCTTTCGTGTTTGGCTAGGACGAGAAGGGTGAAGGAATGCCTTAGGATCCTTGATTCAATGAGAAGATCAGGTTGTGCTCCAGATTGGGTCAGTTACTATCTAGTTGTTCGCGTTTTGTACTTGACTGGAAGATTTGGGAAAGGTAATCAAAGAGTGGATATGATGACAGAAGAAGGGGTGGTTCCACCAGCAAAGTTTTACTATGATCTCATTGGTCTTCTTTGTGGGGTCGAGAGAGCTAATTATGCTCTTGATCTGCTTAATCACATGAAGAAAAACTCTGTTGGCAATTACGGGCCAGTTTATGATGTTCTGATACCAAAGTTTTGCAGAAATGGTGATTTCGAAAAGGGCAAAGAGCTTTGGGATGAGGCAGAGAAGATGGGCATTGTTCTAAAATGCTCAAGAGATGTCTTGGATTCTTCAATAACCGAGGTCTTTCAACCCATAAGGAAGGATGAGGATCTGAAACTCGAAGATCCAAGTGATCTGCATACTCGAACTCAGAAGAGTAAACCTGTAGGGAATGTAAAGAAGCAAAATAACACTAGTTCAAAGAAAAAACAGAAAGCCAAGTCTAAGAAGAATGCAGCTTCAACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_232866.p1 GENE.R_Transcript_232866~~R_Transcript_232866.p1 ORF type:complete len:481 (+),score=86.45,PPR_2|PF13041.2|32,PPR_2|PF13041.2|3e+02,PPR_2|PF13041.2|9.2e+02,PPR_2|PF13041.2|8e-06,PPR_2|PF13041.2|8.2e-06,PPR_2|PF13041.2|4.5e-11,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|1.4,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.89,PPR|PF01535.16|4.2e+02,PPR|PF01535.16|0.33,PPR|PF01535.16|7.7e+02,PPR|PF01535.16|83,PPR|PF01535.16|9.3e-07,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|39,PPR|PF01535.16|0.004,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|4.1,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|3.4e+02,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|4.7e+02,PPR_1|PF12854.3|5.2e+03,PPR_1|PF12854.3|26,PPR_1|PF12854.3|10,PPR_1|PF12854.3|15,PPR_1|PF12854.3|7.3e+02,PPR_1|PF12854.3|0.00039,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|83,PPR_1|PF12854.3|0.39 R_Transcript_232866:202-1644(+)
MLKKFNTFKLKHLPLALYSTLSHGLLQELCTLVSTPIGGFDELESNLSEHQVSLTPSLVVQVVNHCKEEAPTRRLLRFFTWSCKSLGGTLGDKEFNHAVRVFAEKKDHRAIDILLDDLRKDGRTLEPQTFSIVAEVFVKLGREDDALGIFKNLESFKCVQDRTCVEAIVNALCAKGHAKRAEGVVWHHRDKLLGVESHVYRSVLYGWSMHANVKEARRVLQEMKSKKISLDLYCFNTFLRCLCEHNVRNNPSGLVPEALNVMMEMRTYKVIPNSITYNVLLSCLARTRRVKECLRILDSMRRSGCAPDWVSYYLVVRVLYLTGRFGKGNQRVDMMTEEGVVPPAKFYYDLIGLLCGVERANYALDLLNHMKKNSVGNYGPVYDVLIPKFCRNGDFEKGKELWDEAEKMGIVLKCSRDVLDSSITEVFQPIRKDEDLKLEDPSDLHTRTQKSKPVGNVKKQNNTSSKKKQKAKSKKNAAST*

Click here to download the sequence:
Link to NCBI Protein BLAST