Transcript Information: R_Transcript_232868.p1


Annotated TAIR IDAT5G61370.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24672008-24673471 | Reverse length=487
E-Value3E-110
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.24935739009179
Replicate 20.22946776411255
Replicate 30.37552028846151
Condition 2: 8 Hour
Replicate 10.20070381104299
Replicate 20.24438122230804
Replicate 30.14878369360973
Condition 3: 24 Hour
Replicate 10.12545249851204
Replicate 20.1807808105785
Replicate 30.41861730275487


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_232868.p1 GENE.R_Transcript_232868~~R_Transcript_232868.p1 ORF type:complete len:366 (+),score=61.69,PPR_2|PF13041.2|1e+02,PPR_2|PF13041.2|5.6e+02,PPR_2|PF13041.2|5.5e-06,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|3.1e-11,PPR_2|PF13041.2|4.5,PPR_2|PF13041.2|1.2,PPR|PF01535.16|0.58,PPR|PF01535.16|3.1e+02,PPR|PF01535.16|0.23,PPR|PF01535.16|5.6e+02,PPR|PF01535.16|60,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|2.6e+03,PPR|PF01535.16|67,PPR|PF01535.16|0.0028,PPR_3|PF13812.2|2.9,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|0.086,PPR_3|PF13812.2|2.4e+02,PPR_3|PF13812.2|8.5e-05,PPR_3|PF13812.2|4.3e+03,PPR_3|PF13812.2|1e+02,PPR_3|PF13812.2|3e+02,PPR_1|PF12854.3|3.8e+03,PPR_1|PF12854.3|18,PPR_1|PF12854.3|7.4,PPR_1|PF12854.3|11,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|0.00028,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.28 R_Transcript_232868:548-1645(+)
ATGATCTTAGGAAAGATGGAAGAGCATTGGAGCCTCAAAACCTTTAGCATTGTGGCTGAAGTGTTTGTAAAGTTGGGTAGAGAAGATGATGCGTTGGGTATATTTAAGAACTTGGAATCATTCAAGTGCGTACAAGATAGGACTTGTGTTGAAGCTATTGTCAATGCACTTTGTGCTAAGGGCCATGCTAAGAGAGCTGAAGGGGTGGTGTGGCATCATAGGGATAAGTTATTAGGTGTTGAGTCTCATGTTTATAGGAGTGTATTGTATGGATGGTCTATGCACGCGAATGTTAAGGAAGCTCGAAGGGTTCTCCAAGAAATGAAGTCGAAGAAGATTAGTCTTGATCTTTATTGCTTTAATACCTTCCTAAGGTGTCTTTGCGAGCATAATGTTAGGAATAACCCGTCTGGGCTTGTTCCTGAAGCTTTGAATGTGATGATGGAGATGAGAACCTACAAAGTTATTCCAAATTCGATAACTTATAATGTTCTGCTTTCGTGTTTGGCTAGGACGAGAAGGGTGAAGGAATGCCTTAGGATCCTTGATTCAATGAGAAGATCAGGTTGTGCTCCAGATTGGGTCAGTTACTATCTAGTTGTTCGCGTTTTGTACTTGACTGGAAGATTTGGGAAAGGTAATCAAAGAGTGGATATGATGACAGAAGAAGGGGTGATTCCACCAGCGAAGTTTTACTATGATCTTGTTGGTGTTCTTTGTGGGGTCGAGAGAGCTAATTATGCTCTTGATCTGCTTAATCACATGAAGAAAAACTCTGTTGGCAATTACGGGCCAGTTTATGATGTTCTGATACCAAAGTTTTGCAGAAATGGTGATTTCGAAAAGGGCAAAGAGCTTTGGGATGAGGCAGAAAAAATGGGCATTTTTCTAAAATGCTCAAGAGATGTATTGGATCCTTCAATAACCGAGGTCTTTCAACCCATAAGGAAGGATGAGGATCTGAAACTCAAAGATCCAAGTGATCCGCATACTCGAACTCATAAGAGTCAATCTGTAGGTAATGTAAAGAAGCAAAATAACACTAGTTCAAAGAAAAAACAGAAAGCCAAGTCTAAGAAGAATGCAGCTTCAACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_232868.p1 GENE.R_Transcript_232868~~R_Transcript_232868.p1 ORF type:complete len:366 (+),score=61.69,PPR_2|PF13041.2|1e+02,PPR_2|PF13041.2|5.6e+02,PPR_2|PF13041.2|5.5e-06,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|3.1e-11,PPR_2|PF13041.2|4.5,PPR_2|PF13041.2|1.2,PPR|PF01535.16|0.58,PPR|PF01535.16|3.1e+02,PPR|PF01535.16|0.23,PPR|PF01535.16|5.6e+02,PPR|PF01535.16|60,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|2.6e+03,PPR|PF01535.16|67,PPR|PF01535.16|0.0028,PPR_3|PF13812.2|2.9,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|0.086,PPR_3|PF13812.2|2.4e+02,PPR_3|PF13812.2|8.5e-05,PPR_3|PF13812.2|4.3e+03,PPR_3|PF13812.2|1e+02,PPR_3|PF13812.2|3e+02,PPR_1|PF12854.3|3.8e+03,PPR_1|PF12854.3|18,PPR_1|PF12854.3|7.4,PPR_1|PF12854.3|11,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|0.00028,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.28 R_Transcript_232868:548-1645(+)
MILGKMEEHWSLKTFSIVAEVFVKLGREDDALGIFKNLESFKCVQDRTCVEAIVNALCAKGHAKRAEGVVWHHRDKLLGVESHVYRSVLYGWSMHANVKEARRVLQEMKSKKISLDLYCFNTFLRCLCEHNVRNNPSGLVPEALNVMMEMRTYKVIPNSITYNVLLSCLARTRRVKECLRILDSMRRSGCAPDWVSYYLVVRVLYLTGRFGKGNQRVDMMTEEGVIPPAKFYYDLVGVLCGVERANYALDLLNHMKKNSVGNYGPVYDVLIPKFCRNGDFEKGKELWDEAEKMGIFLKCSRDVLDPSITEVFQPIRKDEDLKLKDPSDPHTRTHKSQSVGNVKKQNNTSSKKKQKAKSKKNAAST*

Click here to download the sequence:
Link to NCBI Protein BLAST