Transcript Information: R_Transcript_233385.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.59092319637579
Replicate 20.30210504196112
Replicate 30.41199168338404
Condition 2: 8 Hour
Replicate 10.35231460355749
Replicate 20
Replicate 30.19588069014806
Condition 3: 24 Hour
Replicate 10.41291020193712
Replicate 20.15867092727034
Replicate 30.31493100268917


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_233385.p1 GENE.R_Transcript_233385~~R_Transcript_233385.p1 ORF type:complete len:278 (+),score=42.49,UBN2_3|PF14244.2|7.3e-38,UBN2_3|PF14244.2|2.3e+03,Retrotrans_gag|PF03732.13|8.2e-10,Retrotrans_gag|PF03732.13|6.3e+03,UBN2|PF14223.2|0.00037,UBN2|PF14223.2|0.4 R_Transcript_233385:85-918(+)
ATGTCTGCAGAAAGACAGACTCGCAATACATTCAATTTCCAGGATTTGCAAAATCCTCTTTTTTTACACCCTTCAGATGGCCCAAATTCAGTGTGCAATGCTACAAAATTGCAAGGTTCTGATAATTACAGAGCTTGGAGACGTTCTATGGAGATCAATCTAGCAACCAAGAGAAAACTTGGCTTTGTAACAGGTACTGTCCTTAAGTCTGCTACTAATCTTGTTGAGGCCGAACAATGGGATACATGCAATAGTATGGTGATTGCCTGGTTAATGAACTCAGTTTCTGATACGATTGCTCAATCTATCTTGTATATACCAACTGCTCGTGAGATATGGCTGAGTCTTGAAAAACGATTTTGTCTGACTAATGGTTCTAGAAAATACAAGCTGAATAAATCTACATATGATCTAAAACAGTTGGGTACAACAATTAGTGATTACTATACTAGGTTTCAAAGTGTTTGGGAAGAATTGGATTCATTATCTGAACTTCCTACTATAAGTGAGACCAATGCTGAGATCAATGCATTTATTGCTGCGCTTGCAAAACAACAAAGTGAACAGCATCTTTTTCAATTCTTGAATGGATTAGATGACATATATGGCACTATAAGGAGTAATTTGTTGATGAGATGTCCTTTGCCCACTGTTGAGGAGGCATGTTCTATTATACAGCAAGAAGAATCTCAGAAAGAGATTTTCGATCATTCTGAAATTAGAACTGAGATAGTTGCTTTGTATAGCAAACAAAATGATCTCACATGTAGCAAGTGTGGAAACAAAGGCCATGATATAGCAAGATGTTGGCAAGTTATTGGATATCTTGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_233385.p1 GENE.R_Transcript_233385~~R_Transcript_233385.p1 ORF type:complete len:278 (+),score=42.49,UBN2_3|PF14244.2|7.3e-38,UBN2_3|PF14244.2|2.3e+03,Retrotrans_gag|PF03732.13|8.2e-10,Retrotrans_gag|PF03732.13|6.3e+03,UBN2|PF14223.2|0.00037,UBN2|PF14223.2|0.4 R_Transcript_233385:85-918(+)
MSAERQTRNTFNFQDLQNPLFLHPSDGPNSVCNATKLQGSDNYRAWRRSMEINLATKRKLGFVTGTVLKSATNLVEAEQWDTCNSMVIAWLMNSVSDTIAQSILYIPTAREIWLSLEKRFCLTNGSRKYKLNKSTYDLKQLGTTISDYYTRFQSVWEELDSLSELPTISETNAEINAFIAALAKQQSEQHLFQFLNGLDDIYGTIRSNLLMRCPLPTVEEACSIIQQEESQKEIFDHSEIRTEIVALYSKQNDLTCSKCGNKGHDIARCWQVIGYLD*

Click here to download the sequence:
Link to NCBI Protein BLAST