Transcript Information: R_Transcript_234104.p1


Annotated TAIR IDAT4G18520.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:10215250-10217103 | Reverse length=617
E-Value7.7E-229
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.65392227719397
Replicate 20.45786324895354
Replicate 30.49952387281329
Condition 2: 8 Hour
Replicate 10.6483796014068
Replicate 20.55728054432861
Replicate 30.87647964054828
Condition 3: 24 Hour
Replicate 10.92975543289767
Replicate 20.61837174459563
Replicate 30.68185995909338


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_234104.p1 GENE.R_Transcript_234104~~R_Transcript_234104.p1 ORF type:5prime_partial len:642 (+),score=73.14,PPR_2|PF13041.2|0.00059,PPR_2|PF13041.2|7.3e-06,PPR_2|PF13041.2|0.014,PPR_2|PF13041.2|4e-10,PPR_2|PF13041.2|0.86,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|2.2e+02,PPR_2|PF13041.2|4.2e-11,PPR_2|PF13041.2|0.0024,PPR_2|PF13041.2|8e-08,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.0028,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|5e-06,PPR|PF01535.16|0.019,PPR|PF01535.16|3.9e-07,PPR|PF01535.16|22,PPR|PF01535.16|2.7e-06,PPR|PF01535.16|3.2e+02,PPR|PF01535.16|0.0015,PPR|PF01535.16|1e-06,PPR_1|PF12854.3|0.37,PPR_1|PF12854.3|29,PPR_1|PF12854.3|0.28,PPR_1|PF12854.3|0.0061,PPR_1|PF12854.3|44,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|2e+02,PPR_1|PF12854.3|0.06,PPR_1|PF12854.3|22,PPR_1|PF12854.3|0.021,PPR_1|PF12854.3|0.006,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|13,PPR_3|PF13812.2|93,PPR_3|PF13812.2|0.53,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|37,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|0.0095,PPR_3|PF13812.2|0.14 R_Transcript_234104:2-1927(+)
CTAAATTTAACAACAGAAAACCCCTCTTCAACTAAATTCTCGTTTTCGCGGCAACTTCAACTGTCCATAATCCAAATGCTATCTTTCTTGCCAACCTTAATTCCACCTTCTTTTCATAACCTTCAATTCCAATTCCCATCATCAATACATACACATTACTTTAAAACCCAAAGTCTTCTTACCCATCAAATTTCCTCAACTATTCACAATGTTCGTTGCCAATTTTCGCCAAATTCTGTTAGTGCATCGAATTTCGCCGATATCCAGATCAGTGAAGAGAACCCAGTTACTAAAGTTTCGATGCTTCAGTCATTTGACAGAAGGGTCGATCCGATTTCGCTAGCTACTCTGCTTCAATCACGCCATAGATTAGTAGAAGTTAAAGTTATACATGCTGTGGTTTTGAAGTCTTTGGTGGACTCAATAGTGTTTGTAAATAACAATTTGATTAGTGTTTACTTAGGTTTTGGCAAGTTGTCGGAAGCTCGCAAGGTGTTCGATGAAATGCCTGAGAGAAATATTGTTTCTTGGACTGCAATGCTTAATGGGTATTTAAGGTTTGATTTAGAGGATGAAGCTTTTGGACTTTTACATGATTTTTCGAAGTCCAAGATTAAAGCAAACGGGATGACGTATGTGTGTGTGTTGAATTTATGTGGCAAGAGGTTGGATTATGAGCTTGGTAGACAGGTCCATGCTTGTATTATTAAAGGTAGATGGAGCAATTTGATTGTTGATACTGCTCTCTTGCACTTCTATGCACAATGTGGTGACTTACCGAGTGCTTTCCAGCTGTTTAATTTGATGAAAGAACGGGATGTTGTTAGTTATACGACCATGATCACTTCGTGCTCTCAACAAGGCTATGGAAATGAGGCCTTCTCCATGTTTTCAAGAATGTTAGTGGATGCATGTTTTCCAAATGAACACACTATATGTAGTGTTTTGAAGGCGTGTGGAGATCAAAAGGCTCTGAAATTCGGGAGACAGTTGCATGGTATTGTGGCTAAAAAAGTAATTAGAAATGATGTTTTTATTGGTACTTCCCTTGTTGGTATGTATGCGGGATGTGGTGAAATTGAGGATTCTAGAAAGGTGTTTGACAGGATGAAAAGGCGGAACATGGTTACATGGACTTCAATAATTATGGGGTATGCTAGAAATAAGCTTGGATATGAGGCATTGTCTCTTTTTCGAGTGATGAAAAGACGAAAAGTGGTGGCAAATAATTTGACAATTGTAAGCATCCTCCAAGCCTGTGGTTCTATAGGGGCTCTGTTAACTGGCAAGGAAGTCCATGCTCAAGTGCTGAAGGTCTCAGCTCAGAATAATATTTACATAGGAAGCACTCTTGTGTGGTTTTACTGCAAATGCAGGGATTACACTCTAGCCACAAAGGTTCTTCAAAACATGCCTCTTAGAGATGTTGTCTCCTGGACTGCCATAATCTCTGGTTGTGCTCATTTAGGGTATGAGTTTGAGGCTCTTGAATTTTTGAAAGAAATGCTGGGGGAAGGTGTAGACCCTAATCCTTTTACATACTCATCGGTTCTGAAAGTTTGTGCAAAATTAGAAGCTATCCAGCATGGAAAACTTATACACTCCTCTGTGAACAAATCCCCTGTTTTTTCAAACAATATCTTTGTGGGGAGCGCTCTAATAAATATGTATGCCAAGTGTGGATCTGTTTCGGACGCATTTCAAGTCTTTACCAGCATGCCAGAGAGGAATTTGGTTTCTTGGAGATCTATGATTGTAGGATACGCAAGGAACGGATACTGCCAGGAAGCGCTAAAGCTTATGTACCAGATGCAAGCAGAAGGAATCGAAGTGGATGATTACATCGTGACAACTGTTCTTAGTGCTTGTGGAGATGTAGAATGGAACATGGAACCATTATCTCAACATTTCTTACAGCTAAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_234104.p1 GENE.R_Transcript_234104~~R_Transcript_234104.p1 ORF type:5prime_partial len:642 (+),score=73.14,PPR_2|PF13041.2|0.00059,PPR_2|PF13041.2|7.3e-06,PPR_2|PF13041.2|0.014,PPR_2|PF13041.2|4e-10,PPR_2|PF13041.2|0.86,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|2.2e+02,PPR_2|PF13041.2|4.2e-11,PPR_2|PF13041.2|0.0024,PPR_2|PF13041.2|8e-08,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.0028,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|5e-06,PPR|PF01535.16|0.019,PPR|PF01535.16|3.9e-07,PPR|PF01535.16|22,PPR|PF01535.16|2.7e-06,PPR|PF01535.16|3.2e+02,PPR|PF01535.16|0.0015,PPR|PF01535.16|1e-06,PPR_1|PF12854.3|0.37,PPR_1|PF12854.3|29,PPR_1|PF12854.3|0.28,PPR_1|PF12854.3|0.0061,PPR_1|PF12854.3|44,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|2e+02,PPR_1|PF12854.3|0.06,PPR_1|PF12854.3|22,PPR_1|PF12854.3|0.021,PPR_1|PF12854.3|0.006,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|13,PPR_3|PF13812.2|93,PPR_3|PF13812.2|0.53,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|37,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|0.0095,PPR_3|PF13812.2|0.14 R_Transcript_234104:2-1927(+)
LNLTTENPSSTKFSFSRQLQLSIIQMLSFLPTLIPPSFHNLQFQFPSSIHTHYFKTQSLLTHQISSTIHNVRCQFSPNSVSASNFADIQISEENPVTKVSMLQSFDRRVDPISLATLLQSRHRLVEVKVIHAVVLKSLVDSIVFVNNNLISVYLGFGKLSEARKVFDEMPERNIVSWTAMLNGYLRFDLEDEAFGLLHDFSKSKIKANGMTYVCVLNLCGKRLDYELGRQVHACIIKGRWSNLIVDTALLHFYAQCGDLPSAFQLFNLMKERDVVSYTTMITSCSQQGYGNEAFSMFSRMLVDACFPNEHTICSVLKACGDQKALKFGRQLHGIVAKKVIRNDVFIGTSLVGMYAGCGEIEDSRKVFDRMKRRNMVTWTSIIMGYARNKLGYEALSLFRVMKRRKVVANNLTIVSILQACGSIGALLTGKEVHAQVLKVSAQNNIYIGSTLVWFYCKCRDYTLATKVLQNMPLRDVVSWTAIISGCAHLGYEFEALEFLKEMLGEGVDPNPFTYSSVLKVCAKLEAIQHGKLIHSSVNKSPVFSNNIFVGSALINMYAKCGSVSDAFQVFTSMPERNLVSWRSMIVGYARNGYCQEALKLMYQMQAEGIEVDDYIVTTVLSACGDVEWNMEPLSQHFLQLS*

Click here to download the sequence:
Link to NCBI Protein BLAST