Transcript Information: R_Transcript_234638.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value1E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.7186205100283
Replicate 20.49597560038499
Replicate 30.48098136684835
Condition 2: 8 Hour
Replicate 10.25706944826504
Replicate 20.82165970020104
Replicate 30.47642022625688
Condition 3: 24 Hour
Replicate 11.144877525791
Replicate 20.057887818610439
Replicate 30.22979217519052


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_234638.p1 GENE.R_Transcript_234638~~R_Transcript_234638.p1 ORF type:5prime_partial len:381 (+),score=57.29,PIF1|PF05970.10|2.4e-69,Herpes_Helicase|PF02689.10|6e-08 R_Transcript_234638:3-1145(+)
AGTGTCCCTAAGCAAAGTGATTTAGCTCACCTTTTTCGAGAGGCGGCTCTAATCATATGGGATGAAGCATCGATGGCACGCAGGGAGAACGTTGAAGCTCTTGACCGTCTTTTGCAGGACATTTGTAATTGTTCGTTGTCGTTTGGAGGAAAAGTTGTTGTGTTTGGTGGCGATTTTAGGCAAGTGTTGCCTGTAATTCCAAAGAGAACTCAACATGAGCTTGTTGAGTACAGCCTTGTGAGTTCATATCTATGGCCCACTTTGCAGAGGTTCACACTTGCTGAAAACATGCGTGCAAAAGAAGATCCACAATTCACTGCTTTCTTGTTGAAGCTTGGTAATGGTGAGTTGCAGATAGCTGAACAGGCTCTTGTTGCATTGCCTGAGTCATTGGTGTATAGGCTTCCACAGGACACGAATTGCTTGCAATATCTGGTCTCTAAAGTCTACCCTGATCTTCCTCATCTCGCAGCTCATCCACATGCATTCACCTCTCGTGCTACCTTGACTCCAACAAATGATGAGGTTGATTGTATTAACAAGTTGGTGATAGAGAATTTCCCAGGGGAATCACATACTTACAAAAGTTATGACGCTACATTAGACGATGATTGCAATGCTCATCCCATTGAATTCCTCAATACATTGTGCCCAGGTGGGATGAGTCCTCATGTACTAACATTGAAGCTCAACTGCCCTGTCATCTTGCTTCGAAATCTAAGCCCGTCTACAGGCCTTTGCAATGGCACTAGACTCATCTGCAGAGGCTTCAAGGCAAATGTTCTTATTTGTGAAATAGCCACAGGATATCGTGCTGGAGAGTTTGTCTTTATTCCACGAATAAATCTGAGGCCATCTACATCGATCACATATCCATACAAATTTGAAAGACGACAATTCCCAATCAAGCTATGTTTTGCAATGACCATTAACAAATCACAGGGCCAAACATTAAGTGAAGTAGCTGTATACCTCCGCCGGCATTGTTTCTCACATGGGCAGCTATACGTTGCATTGTCAAGAGCTAGGACAACAAAGAGTGTGAAGGTCTTTATTGATCCCATCGAGGAAGCAGATGAGTGCTCAACCTCAGTAACCAATGTTGTATCTTTTGAAGTCCTTAGAAAAGCTGGTGTGCTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_234638.p1 GENE.R_Transcript_234638~~R_Transcript_234638.p1 ORF type:5prime_partial len:381 (+),score=57.29,PIF1|PF05970.10|2.4e-69,Herpes_Helicase|PF02689.10|6e-08 R_Transcript_234638:3-1145(+)
SVPKQSDLAHLFREAALIIWDEASMARRENVEALDRLLQDICNCSLSFGGKVVVFGGDFRQVLPVIPKRTQHELVEYSLVSSYLWPTLQRFTLAENMRAKEDPQFTAFLLKLGNGELQIAEQALVALPESLVYRLPQDTNCLQYLVSKVYPDLPHLAAHPHAFTSRATLTPTNDEVDCINKLVIENFPGESHTYKSYDATLDDDCNAHPIEFLNTLCPGGMSPHVLTLKLNCPVILLRNLSPSTGLCNGTRLICRGFKANVLICEIATGYRAGEFVFIPRINLRPSTSITYPYKFERRQFPIKLCFAMTINKSQGQTLSEVAVYLRRHCFSHGQLYVALSRARTTKSVKVFIDPIEEADECSTSVTNVVSFEVLRKAGVL*

Click here to download the sequence:
Link to NCBI Protein BLAST