Transcript Information: R_Transcript_235972.p1


Annotated TAIR IDAT1G71460.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:26928247-26930316 | Reverse length=689
E-Value9.1E-261
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.73416902591795
Replicate 20.61154273057179
Replicate 30.95312361703824
Condition 2: 8 Hour
Replicate 10.74714151017946
Replicate 20.55824670338605
Replicate 30.98184856337738
Condition 3: 24 Hour
Replicate 11.0507734237368
Replicate 21.2541825444018
Replicate 30.94108022925633


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_235972.p1 GENE.R_Transcript_235972~~R_Transcript_235972.p1 ORF type:complete len:721 (+),score=107.10,PPR_2|PF13041.2|0.0016,PPR_2|PF13041.2|0.00011,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|6.6e+03,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.97,PPR_2|PF13041.2|8.8e-05,PPR_2|PF13041.2|7.9e-06,PPR_2|PF13041.2|0.0025,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|2.8e+03,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|6.8e+03,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.0056,PPR|PF01535.16|0.043,PPR|PF01535.16|2.1,PPR|PF01535.16|0.0026,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|0.077,PPR|PF01535.16|0.00026,PPR|PF01535.16|1.3e+04,PPR|PF01535.16|14,PPR|PF01535.16|0.064,PPR|PF01535.16|0.78,PPR|PF01535.16|1.2e+02,PPR_3|PF13812.2|4.7e+03,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|6.7e+02,PPR_3|PF13812.2|2.4e+02,PPR_3|PF13812.2|9.6e+03,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.25,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|0.043,PPR_3|PF13812.2|19,PPR_3|PF13812.2|5.3,PPR_3|PF13812.2|2.8e+02,PPR_1|PF12854.3|4e+02,PPR_1|PF12854.3|86,PPR_1|PF12854.3|3.8e+03,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|0.61,PPR_1|PF12854.3|0.087,PPR_1|PF12854.3|2.4e+03,PPR_1|PF12854.3|5.5,PPR_1|PF12854.3|0.058,PPR_1|PF12854.3|4.8e+02,PPR_1|PF12854.3|8e+02,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|27,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|1.2e+03 R_Transcript_235972:49-2163(+)
ATGGCTGCAGCAGTGAGAACTTCACTAACTGTATCACCATCACCATCTCCACCAACATGTGCTTCATTTCCTTTCAATTGCCCTTCCTATCCCGCCAAATGCAAAACCACCAAAAACAGAAGTTCCAGAGTTCACAATAAAACTCAAAACCCAACACTTGACCAGAACCCAAAAACCCAGAAAATTTCCACAAAAAACAAAGGAGAGGAAGAACCAACCTATGCTTGGTCAATTCCACTCCACAAGAAAAACCCAAATGCCATTTACAAAGACATTCAAAGATTTGCTAGAAAAAATAAGCTCAAAGAAGCCCTCACTATATTAGACTATCTTGACCATCTGGGTATACCTGTAAATGTCTCAACTTTTTCTCACCTTATAGCTGCTTGTATTAGATCAAAATCTAATATTTATGCTAAAACAATCCATACCCATATCAGGATTAATGGGCTTGAAAATATTGAGTTCCTTAAACCCAAGATTGTTCAAATGTATGCTTCTTGTGGGTCATTGGAGGTTGCCCAAAGATTGTTGCTTGATGATGATAAAAATGATGGTAATAATGGGACTTGTGATAATGTTTATGCATGGAATGCTTTGCTTAGAGGGAATGTGGTTTCAGGGGGGAGGAAATATAAGGATTTGTTGTATACTTTTTCTAGGATGAGAGAAAAAAAGGTTGACTTTAATGTGTATAGTTTTTCTTGTATGATCAAGAGTTTTGGTGGGGCTGTGGCTTTTAGGCAAGGCTTAAAGATGCATGCTTTATTGATTAAGAATGGGTTCATTGGAAGCTCAATTCTTATGACAAGTTTGATTGATATGTACTTTAAATGTGGGAGGATTAAACTTGCCTGCCTACTGTTTGATGAAATTCCGGAAAGAGATGTTGTTTTATGGGGGACCATGATTGCAGGGTTTGCACACAATAATAATCAGAAAGAAGCAATAAGGTATATGAGGTTGATGATGAAGGAAGGTGTAGTTCCTAATTCGGTCGTGCTCACTATGATCCTGCCTATTCTAGGGGAAGTTGGGGCATGGAAGCTGGGCAAGGAGATTCATGCCTATGTATGCAAAAAAGGGAACTATTCAGAGCATCCCTTTGTGAAGTCTGCTTTGATTGACATGTATTGTAAATGTGGGGACACGACTTATGGGAGAAAGGTTTTTTACGGTTCAAAGATTAGGAGCACAGTCTCATGGACTGCTTTGATATCTGGTTATATATCAAATGGCAGGCTCGAGCAGGCTGTGAGATCCATAATGTGGATGCAACAAGAGGGTTTTAGGCCTGATGTTGTTTCATTGGCAACTGTCCTTCCAGTTTGCACTAAGTTGCGAGCGGTAAGGCAAGGCAGGGAGATTCATGGATATATGGTGAAAAATGGGTTTCTTCCTTATGTATCGTTGATTACATCATTGATTGTGATGTACTCGAAATGTGGTGTGTTGGAGCAGAGTCGTCGATTGTTTCATAGCATGGAGAAAAGAAATGTGATTGCATGGACTGCTTTTATCAATTCATGCTTTGAAAATGGGCAGCCCTATGAAGCCCTTGATGTGTTCAGGTCAATGCAGTTGTCTAAGCACAGGGCAGATTCAGTTGCAATGTCACGAGTGCTAGACATTTGCAGCGAACTGAGGATGTTGAAACTTGGGAAAGAGGTGCACGGGCAGGTCTTAAAGAAAGATATCGAATGTGTCCCTTTTGTTACGGCTGGGCTTATCAAAGTGTATGGAAGATGTGGAGGAATCGTAAAGGCCAAAATGGTTTTTGATCTTTACCCGAGCCTAGGCTCAGTAGCTTTGACTGCAATGACAGAGGTTTATGGATACAATAAATATTTCAAAGAAGCACTTGCTCTTTTCGATCAAATGGTGGATGTTGGTCTGGTGCCACATGTAATCACCTTCAATGTGGTCTTATCACTTTGTGATCAAGCTGGATTTGCAGATGAGGCTTGTAGAATCTTTCAACTTATGACTCAAAGATGTAGGATCAAACCATTGAAAGAACATTACAATATAATTGCTGGACTTCTTACTCGTGCAGGTCGAGTCCAGGAAGGTGAAAGATATATACAATGGAGTTCCAGGTTGAACTCTTCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_235972.p1 GENE.R_Transcript_235972~~R_Transcript_235972.p1 ORF type:complete len:721 (+),score=107.10,PPR_2|PF13041.2|0.0016,PPR_2|PF13041.2|0.00011,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|6.6e+03,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.97,PPR_2|PF13041.2|8.8e-05,PPR_2|PF13041.2|7.9e-06,PPR_2|PF13041.2|0.0025,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|2.8e+03,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|6.8e+03,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.0056,PPR|PF01535.16|0.043,PPR|PF01535.16|2.1,PPR|PF01535.16|0.0026,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|0.077,PPR|PF01535.16|0.00026,PPR|PF01535.16|1.3e+04,PPR|PF01535.16|14,PPR|PF01535.16|0.064,PPR|PF01535.16|0.78,PPR|PF01535.16|1.2e+02,PPR_3|PF13812.2|4.7e+03,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|6.7e+02,PPR_3|PF13812.2|2.4e+02,PPR_3|PF13812.2|9.6e+03,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.25,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|0.043,PPR_3|PF13812.2|19,PPR_3|PF13812.2|5.3,PPR_3|PF13812.2|2.8e+02,PPR_1|PF12854.3|4e+02,PPR_1|PF12854.3|86,PPR_1|PF12854.3|3.8e+03,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|0.61,PPR_1|PF12854.3|0.087,PPR_1|PF12854.3|2.4e+03,PPR_1|PF12854.3|5.5,PPR_1|PF12854.3|0.058,PPR_1|PF12854.3|4.8e+02,PPR_1|PF12854.3|8e+02,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|27,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|1.2e+03 R_Transcript_235972:49-2163(+)
MAAAVRTSLTVSPSPSPPTCASFPFNCPSYPAKCKTTKNRSSRVHNKTQNPTLDQNPKTQKISTKNKGEEEPTYAWSIPLHKKNPNAIYKDIQRFARKNKLKEALTILDYLDHLGIPVNVSTFSHLIAACIRSKSNIYAKTIHTHIRINGLENIEFLKPKIVQMYASCGSLEVAQRLLLDDDKNDGNNGTCDNVYAWNALLRGNVVSGGRKYKDLLYTFSRMREKKVDFNVYSFSCMIKSFGGAVAFRQGLKMHALLIKNGFIGSSILMTSLIDMYFKCGRIKLACLLFDEIPERDVVLWGTMIAGFAHNNNQKEAIRYMRLMMKEGVVPNSVVLTMILPILGEVGAWKLGKEIHAYVCKKGNYSEHPFVKSALIDMYCKCGDTTYGRKVFYGSKIRSTVSWTALISGYISNGRLEQAVRSIMWMQQEGFRPDVVSLATVLPVCTKLRAVRQGREIHGYMVKNGFLPYVSLITSLIVMYSKCGVLEQSRRLFHSMEKRNVIAWTAFINSCFENGQPYEALDVFRSMQLSKHRADSVAMSRVLDICSELRMLKLGKEVHGQVLKKDIECVPFVTAGLIKVYGRCGGIVKAKMVFDLYPSLGSVALTAMTEVYGYNKYFKEALALFDQMVDVGLVPHVITFNVVLSLCDQAGFADEACRIFQLMTQRCRIKPLKEHYNIIAGLLTRAGRVQEGERYIQWSSRLNSS*

Click here to download the sequence:
Link to NCBI Protein BLAST