Transcript Information: R_Transcript_23609.p1


Annotated TAIR IDAT5G15170.1
Annotated Gene Nametyrosyl-DNA phosphodiesterase-related
Annotated Gene Symbol(s)TDP1
Annotation TypeOrtholog
Chromosome Positionchr5:4926300-4929307 | Reverse length=605
E-Value9.4E-228
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7443141828085
Replicate 23.4582141862138
Replicate 34.2781701098696
Condition 2: 8 Hour
Replicate 15.4012937383629
Replicate 26.0177079072602
Replicate 37.9546764189343
Condition 3: 24 Hour
Replicate 17.1911954992661
Replicate 25.0597358631324
Replicate 36.6306870080895


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23609.p1 GENE.R_Transcript_23609~~R_Transcript_23609.p1 ORF type:5prime_partial len:680 (+),score=123.43,Tyr-DNA_phospho|PF06087.8|2.8e-91 R_Transcript_23609:2-2041(+)
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAACCTTCACCGGAATCTCCATCTCAAACCTCATCATCACTTTCTCTATCCTCCACTTAGGGTTTCACTACGCTCGCATGCAACTCGACCTTCATCAATGTCTCTCTCTCAGGTCGGAGTGCTGATACCGTTGAATAAAAGCTTGAAGGAGGATAAGTCATTGCCAGAACTCAAAGTACTGGAAGGCGATAATGTGATAGGGCGTAATAATGTTCCGGTGACAGATAAAAGACTCAGTCGAAAGCATATTACCTTGTCTGCTTCTACTGACGGTTCTGCCGATTTGCTCGTCGAAGGGATGAATCCTGTGGTGATTAAATCGGGAGGTCAAAGGAGGATATTGAGTTCCGGTGAGAGGGCTACTGTTAATAGTGGCAATCTTATTGAGTTAATACCAGGAAGTTACTTTTTTAAGTATGTAACTTTATGTGGTCGAAATTCCGCTATGGTTGGCAAAGTGTGTGGCAGTGATAGTGAATGTAAAAGTGCTGGAAGTGGCACAAAACGAACAAGAGAAGAGTCTACCTCTGGAGCTTCTGCTGGAAAGTCACTGATTCAACATAGAAGTGAGACAAAAGTAAATGAAGAATCTTCTGTGAGCAGAAATAATGTAAATGCTGAATCTAAAAGACAAAATGTTTCAGCTTCGGGCAAGAGTGAGGAGGCACTTCGTCACTTTCACATTTCTGATGATAAATTACCTTCAAGTTTTCGTCTTATGAAAGTCCGAGGGCTTCCAGAATGGGCAAATACCTCTTGTGTTTCCATTGACGAGGTTATCAAGGGGGATGTGCTTGTTGCTATCCTTTCAAATTACATGGTGGACCTAGATTGGTTATTATCTGCATGTCCAAAACTTAAGCAAGTTCCTCATGTGCTGGTTGTTCATGGAGAAAGTGATGGTACCCTTGAGTATATGAAGAGAAACAAGCCTAGCAACTGGATTTTGCATAAGCCACCATTACCTATTTCATATGGGACGCATCATTCAAAGGCTATGCTTCTTGTGTACCCTCGGGGAGTGAGGGTCATTGTTCACACAGCAAATTTGATATATGTTGACTGGAATAATAAAAGTCAAGGATTGTGGATGCAAGATTTTCCTTGGAAAGACCAGAAAGAGGGAAGCAAAGGATGTGAATTTGAAACTGACCTTGTTGATTACCTACAGGCTCTAAAGGTCAGATTGATTGCATCAGTTCCTGGATATCATTCAGGGTCGAATTTAAAGAAATGGGGTCATATGAAACTACGTTCCATTCTGGAGCGGTGTACTTTTGACAAAGAATTTAAGAAATCGCCTCTTGCTTATCAGTTTTCATCTCTCGGTTCTCTGGATGAGAAGTGGATGGCTGAACTAAGATCTTCAATGTCATCTGGCTTGTTGGCTGATAAGACGCCCTTGGGTTTAGGAGAGCCACTAATAATATGGCCTACAGTGGAAGATGTCAGATGGTCATTGGAGGGATATGCAGCTGGAAATGCCATCCCTAGTCCGGTAAAAAATGTCAAGAAGGAATTTTTGAAGAAGTACTGGGCAAAGTGGAAGGCCACCCACACTGGCCGATGCCGTGCAATGCCTCATATAAAGACATTTGTTCGTTATAATGGTCAAAATCTTGCTTGGTTCTTGCTTACATCAGCAAATCTCAGCAAAGCTGCCTGGGGAGCCCTTCAAAAGAACAATTCACAGTTGATGATTCGTTCCTATGAGCTGGGTGTGCTGTTTTTGCCTACTGCTTTCAGAAACATTTGTGGATTCTCTTGTACAGATGATAAGTGTTCTATAAAGGTTAAGAGGGGATCAGTGGATAATTCCAATCGAGAGGCAAAATTGGTAACCCTGAGATGGTCTGGAATAGAGAATGCAGATTCTGATTCTGAAATATTTCCACTTCCTGTTCCATATGAACTTCCGCCACAATTGTACTCTCCTCAAGATGTTCCATGGTCTTGGGACTGCGAATACAGGCAAAAGGACGTTTATGGTCAATTTTGGCCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23609.p1 GENE.R_Transcript_23609~~R_Transcript_23609.p1 ORF type:5prime_partial len:680 (+),score=123.43,Tyr-DNA_phospho|PF06087.8|2.8e-91 R_Transcript_23609:2-2041(+)
LSLSLSLSLSLFNLHRNLHLKPHHHFLYPPLRVSLRSHATRPSSMSLSQVGVLIPLNKSLKEDKSLPELKVLEGDNVIGRNNVPVTDKRLSRKHITLSASTDGSADLLVEGMNPVVIKSGGQRRILSSGERATVNSGNLIELIPGSYFFKYVTLCGRNSAMVGKVCGSDSECKSAGSGTKRTREESTSGASAGKSLIQHRSETKVNEESSVSRNNVNAESKRQNVSASGKSEEALRHFHISDDKLPSSFRLMKVRGLPEWANTSCVSIDEVIKGDVLVAILSNYMVDLDWLLSACPKLKQVPHVLVVHGESDGTLEYMKRNKPSNWILHKPPLPISYGTHHSKAMLLVYPRGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQKEGSKGCEFETDLVDYLQALKVRLIASVPGYHSGSNLKKWGHMKLRSILERCTFDKEFKKSPLAYQFSSLGSLDEKWMAELRSSMSSGLLADKTPLGLGEPLIIWPTVEDVRWSLEGYAAGNAIPSPVKNVKKEFLKKYWAKWKATHTGRCRAMPHIKTFVRYNGQNLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLFLPTAFRNICGFSCTDDKCSIKVKRGSVDNSNREAKLVTLRWSGIENADSDSEIFPLPVPYELPPQLYSPQDVPWSWDCEYRQKDVYGQFWP*

Click here to download the sequence:
Link to NCBI Protein BLAST