Transcript Information: R_Transcript_23689.p1


Annotated TAIR IDAT2G05160.1
Annotated Gene NameCCCH-type zinc fingerfamily protein with RNA-binding domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:1859011-1860931 | Reverse length=536
E-Value6.5E-140
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.143853481617
Replicate 211.909503735211
Replicate 315.186787356565
Condition 2: 8 Hour
Replicate 19.9206082659189
Replicate 215.813220307579
Replicate 314.608202285652
Condition 3: 24 Hour
Replicate 114.459613392035
Replicate 28.5296581344774
Replicate 314.793347366651


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23689.p1 GENE.R_Transcript_23689~~R_Transcript_23689.p1 ORF type:complete len:543 (+),score=88.40,OST-HTH|PF12872.3|4.7e+03,OST-HTH|PF12872.3|1.1e-11,RRM_5|PF13893.2|4.3e+03,RRM_5|PF13893.2|9.7e-08,RRM_6|PF14259.2|2.1e-07,RRM_1|PF00076.18|1.8e-07 R_Transcript_23689:454-2082(+)
ATGGATTTATCCGACGCAACAAATATTCTGGTAGATAGGATTGCAAAGTTGGAACCCTTAGATGTAGCCCAAAAAATAACAGGATTTTTGCTATTACAAGACCATGGGGAAAGGGAAATGATAAGGCTAGTTTATGCTCCTGAAAAACTCTTGGAAAATTTGGTGAATAGAACCAAAGTTCAACTAGAATATATCTCCAATAGCCAAGTTTCGAGTTCCATGTCAGACTTGAGTTATGCCCCCTTTTCACCCAACGGGTCTCGACCCTACTCGTCTCTATCCTCGTTTCAGTTCTCAGTACCGAATTACTGGGACCCACAGCTGCCACCGGAGCAGCAAGCGGTTCTGAGTTCCGAATTTGCTTCAAGGTATGGGGATTCGGCTGTGGAGGATTTCCGGATCCAGAATCAAGCCCAGTTTGTACCATATGAGGATCCATTGGATCCTCTTGGTGCCGGGGCAGGAGGTTATTTGAGGGATATTTACTACCAGAGTCGTCTCTCACCAAGTTTGTCTGACCTCCCCATGAAGACCTGCCATTATTACAACAAAGGGTTTTGCAAACATGGCAGTAGCTGCCGGTATTTGCATGGCCCAGACAATATGAGTTCGATTAATTTCACAGAATATGGTGGGGATGATCACATGTTCTCACCTGTATCACTGGAAAAACTCGAGCTTGAGATAACCGAGCTCTTGAAATTGAGGAGGGGAAGTCCTGTCTCCATTGCTTCCCTTCCCATGTTATATCTTGAGAAGTATGGAAAGAACATTCAAGCCGAGGGTTACCTTACTGAGAGCCAAAGGCATGGGAGGGCTGGTTACAGCTTGACGAAACTTCTTGCTAGGTTGAAGAGCATTCGGCTAATTGATAGGCCACATGGACAACATTCTGTGATCTTAGCTGAAGATGCTGCAAAATACAACCTAGAATATAGAAATGAAAGGAATGATCCTGGCCCTATCGTCAGTGGGTCTCGTCAGATATACTTAACTTTTCCAGCTGAGAGTGGATTCTCTGAAGATGATGTGTCCAAATACTTCAGCACTTTTGGTCCGGTGGAAGATGTCAGGATACCCTGCCAACAAAAGCGGATGTTTGGATTTGTAACTTTTGCAAGTGCTAATACTGTGCGGACTGTCTTGGCAAAAGGGAATCCCCATTTTGTTTGTGGCTCTCGTGTTCTTGTTAAACCTTATAGGGAAAAGTCGAAGCTTGTCGAGAGGAAATACATGGAGAAAAATGATCATGGTATGTACTACCCTGGAAATTACTTGGACCTAGAACCTGAATTCCATCCACTGCCTAGATTTGAACCTCCCAGGGTTTTGATGAGGAGGCAACTGGAAGAGCAGGAGGCAAAGACTCTGGAAATGAGGAGGCACCTTTCAGAATTGCATCTAGGACGTAAACGTATTCACAATCAACAATATCTCGACTATGATGAGCTACATGCTTCAGAAGATGAAATCAATTATCTGCTCGGTTTTATCAATAACATGTCCGTAAGTGACAATAGATCAAAGCATCCTGGGACTGACTTCATTGATCAAGAGAGTCAGGGGATAAATCTTCCGGAGAGTCCCTTTGCAGCAGTTATAGGAAGTGGCCATTCTACAATCATCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23689.p1 GENE.R_Transcript_23689~~R_Transcript_23689.p1 ORF type:complete len:543 (+),score=88.40,OST-HTH|PF12872.3|4.7e+03,OST-HTH|PF12872.3|1.1e-11,RRM_5|PF13893.2|4.3e+03,RRM_5|PF13893.2|9.7e-08,RRM_6|PF14259.2|2.1e-07,RRM_1|PF00076.18|1.8e-07 R_Transcript_23689:454-2082(+)
MDLSDATNILVDRIAKLEPLDVAQKITGFLLLQDHGEREMIRLVYAPEKLLENLVNRTKVQLEYISNSQVSSSMSDLSYAPFSPNGSRPYSSLSSFQFSVPNYWDPQLPPEQQAVLSSEFASRYGDSAVEDFRIQNQAQFVPYEDPLDPLGAGAGGYLRDIYYQSRLSPSLSDLPMKTCHYYNKGFCKHGSSCRYLHGPDNMSSINFTEYGGDDHMFSPVSLEKLELEITELLKLRRGSPVSIASLPMLYLEKYGKNIQAEGYLTESQRHGRAGYSLTKLLARLKSIRLIDRPHGQHSVILAEDAAKYNLEYRNERNDPGPIVSGSRQIYLTFPAESGFSEDDVSKYFSTFGPVEDVRIPCQQKRMFGFVTFASANTVRTVLAKGNPHFVCGSRVLVKPYREKSKLVERKYMEKNDHGMYYPGNYLDLEPEFHPLPRFEPPRVLMRRQLEEQEAKTLEMRRHLSELHLGRKRIHNQQYLDYDELHASEDEINYLLGFINNMSVSDNRSKHPGTDFIDQESQGINLPESPFAAVIGSGHSTII*

Click here to download the sequence:
Link to NCBI Protein BLAST