Transcript Information: R_Transcript_238948.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26646658328057
Replicate 20.204343556363
Replicate 30.83601232102746
Condition 2: 8 Hour
Replicate 10.65533945114281
Replicate 20.27203019271515
Replicate 30.30915151908202
Condition 3: 24 Hour
Replicate 10.61444252920863
Replicate 20.64394916468839
Replicate 30.26627377964595


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_238948.p3 GENE.R_Transcript_238948~~R_Transcript_238948.p3 ORF type:complete len:411 (+),score=89.32,UBN2_3|PF14244.2|2.7e-42,Retrotrans_gag|PF03732.13|4.3e-10 R_Transcript_238948:4684-5916(+)
ATGATGACATCTTCTTCGAGTAACTCAAATTTGAATTCTACACAAACAACAATTGATGTGAATAATGAACTCTATATTCATCACTCAGATGTTTCTCATAATTTTACTCTTGCAACAAGGAAGTTTAATGGAGACAATTATGGAGAGCGGAAAAGGTCTGCAGAAATCACATTGAGTGCCAAGAACAAGCTCGGATTTGTCAAAGGAACTTGCAAGAAACCTGATTCTACTTCTCCTCTACTAAGTCATTGGGAGAGATGCAATAATTTGGTAATTTCCTGGATTTTACACTCTGTTGAACCTGAAATTGGTAGGAGCATTTTGTACTATACTACAGCTGCTGAAATTTGGACTGAATTACATGATAGATACTCTCATTCAAATGCGCCTAGAAAATATCAAGTACATAATCACATTGCTTCAATTGCTCAAGGAAATAGGACTGTGACAGAATATTATACTGAATTGAAAACATCTTGGGATGAATACATGTCCTTGTTTAATCTGTCTGCTTGCACTTGTGGTAGTGGTAATGCCTTTATGGACATTTTACAAGAACAACAATTGCTTCAGTTTCTTTTAAAGTTGAATGATGATTTCAAGACTGCAAGAGGAAATATTCTCATGAGGCAGCCTTTACCTACCTTAAGTCATGCCTATAGATTGATATTACAAGAAGAGAAACAAAGAGAATGTTCTCATTCTTTTTCACTTGGTTCTGACTCTGCTGCTTTGGTTGCTCGAAATGGGAATGGTAATTTTAGACCACATTTTCCCGGTAATAAGTCTACTAATCCTAGATGGAATTCTGGAAAACAAAACTCATCTACTTCTAGCAGCTATGGTTCTCAACAGAATGGTTATAATTCTTCTCAGAATACAGTGTATGGTATTACACCTAATGGTAGAAGGTCCAAATTCTTTTGTGAAAATTGCAAAGTCTATGGGCATAGCATTGATAGGTGTTATAAGGTTCATGGTTATCCCAATGATAAAGGCAAGAAAGCTATGAATTGTCTTCAAGGTGATATTCAAGACACTGGTCAATTGTCTTTTGGTTCTGATGCTTCTGATTGCAAGTCTATTAGTCAAGACCAGTACAATCATCTTCTTCAGATCATGCAGCAGCACAACATTGATTCCATACCTTCTTCTTCTTCTGGTGGTGGTCATGCACAACCTTCTGCTTTCTTGGCTGGTGCCTTCCAAGAGGCAGCCTCTGGTCCTTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_238948.p3 GENE.R_Transcript_238948~~R_Transcript_238948.p3 ORF type:complete len:411 (+),score=89.32,UBN2_3|PF14244.2|2.7e-42,Retrotrans_gag|PF03732.13|4.3e-10 R_Transcript_238948:4684-5916(+)
MMTSSSSNSNLNSTQTTIDVNNELYIHHSDVSHNFTLATRKFNGDNYGERKRSAEITLSAKNKLGFVKGTCKKPDSTSPLLSHWERCNNLVISWILHSVEPEIGRSILYYTTAAEIWTELHDRYSHSNAPRKYQVHNHIASIAQGNRTVTEYYTELKTSWDEYMSLFNLSACTCGSGNAFMDILQEQQLLQFLLKLNDDFKTARGNILMRQPLPTLSHAYRLILQEEKQRECSHSFSLGSDSAALVARNGNGNFRPHFPGNKSTNPRWNSGKQNSSTSSSYGSQQNGYNSSQNTVYGITPNGRRSKFFCENCKVYGHSIDRCYKVHGYPNDKGKKAMNCLQGDIQDTGQLSFGSDASDCKSISQDQYNHLLQIMQQHNIDSIPSSSSGGGHAQPSAFLAGAFQEAASGPW*

Click here to download the sequence:
Link to NCBI Protein BLAST