Transcript Information: R_Transcript_23928.p1


Annotated TAIR IDAT5G16420.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5368034-5369641 | Forward length=535
E-Value9.5E-217
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.5058904860526
Replicate 23.6890696058542
Replicate 36.850613112868
Condition 2: 8 Hour
Replicate 15.5836925674092
Replicate 27.7740635933841
Replicate 38.3124198168127
Condition 3: 24 Hour
Replicate 19.6551525723989
Replicate 27.3792361521745
Replicate 39.164197850215


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23928.p1 GENE.R_Transcript_23928~~R_Transcript_23928.p1 ORF type:complete len:535 (+),score=68.85,PPR_2|PF13041.2|1.2e+03,PPR_2|PF13041.2|2.6e+03,PPR_2|PF13041.2|6.9e-07,PPR_2|PF13041.2|5e-12,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|9.4e-18,PPR_2|PF13041.2|0.0065,PPR_2|PF13041.2|0.0022,PPR_2|PF13041.2|7.7e-05,PPR_2|PF13041.2|1.5e-18,PPR_2|PF13041.2|9.8e-14,PPR_1|PF12854.3|8.8e+03,PPR_1|PF12854.3|3.2e-10,PPR_1|PF12854.3|0.0079,PPR_1|PF12854.3|1.2e-12,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|0.36,PPR_1|PF12854.3|2.3e-05,PPR_1|PF12854.3|0.00036,PPR_1|PF12854.3|2.6e-12,PPR_1|PF12854.3|0.019,PPR|PF01535.16|2.6e+03,PPR|PF01535.16|6.4e+02,PPR|PF01535.16|6.2,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|0.015,PPR|PF01535.16|4.6e-09,PPR|PF01535.16|4.7e-05,PPR|PF01535.16|0.17,PPR|PF01535.16|0.0002,PPR|PF01535.16|4.8e-06,PPR|PF01535.16|2.1e-08,PPR|PF01535.16|7e+02,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|27,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|53,PPR_3|PF13812.2|0.08,PPR_3|PF13812.2|5.8,PPR_3|PF13812.2|8.8e-06,PPR_3|PF13812.2|41,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|53,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|0.00026,PPR_3|PF13812.2|1e+04 R_Transcript_23928:290-1894(+)
ATGTCAACACTTTTCCGGCAGCACCTCTCCACCACTGATAACTGCCTTCTCCGGTGTATCTCCACTGCCCCAAACTCCTACAAAATAACCCCACCCATAAAACCATTTCCCAAAACCCTTTCCCCAAAACGCCTCGTTTCACTCATCAACCGCCAACAAAACCTCGACCTTGCCCTTCAAATCTTCAACTACGCCTCCCAAAACCACCCAAACTCCGCTCATAACTACGCCACCTACCTCTCTATAATCACGCGCCTCGCACGTGCCCGCCAGTTTCCCCAACTCGAAACCCTCTTAACCCAACTCCAAACCCACCAACCCCACATCAAATGTGGGGAAATCCTCTTTGTAACCGTCATTCGAAACTACGGTCTTGCAAGTCGCCCAAACGACGCCGTTCGGACCTTCTTGAGGGCCCCACGTTTCGCGGTAAATCGGTCGGTACGTAGCTTGAATTGTTTATTGAATGCCCTTGTACAGAATAAGAAATTTGATTGGGTTTATTTGATTTTCAAGAACTGTAGGACTAGGTTTAATGTTGTTCCTAATATTTTTACTTTTAATATTCTTGTTAAAGCCCTTTGTAAGAAGGGTGATGTTGATGGTGGTATTGGGTTGTTAGATGACATGGCTGGTATGGGTATGATTCCCAATGTTGTTACTTATACTACTATTTTAGGTGGGTTTGTTGAGAAAAGGGATATGGTGGGTGCTGAGAGGATTTTTCAGATGATTTTGGATAGAGGATGGGTCCCGGATGCGACGACATATACGGTTTTGATGGATGGGTATTGTAAGGTTGGGAGGTTGGAGGATGCTATTAGGGTTATGGATGATATGGAGGAGAATGGGGTTAGGGCAAATGAGATTACGTATGGGGTTATGATCGAAGCGTATTGCAAGGGGAGGATGTCCGGGGAGGCGGTTAGTTTGGTTGGGGATATGTTGGAGAGGAAGTATGTCCCTAGCTCCGCGTTGTGTTGTAAGGTGATTGATCTTTTGTGCGAGGAGGGGAAGGTCGAGGACGCATGTGGCTTGTGGAGGATGCTCTTGAAGAAGAATGTGACCCCGGATAATGGGGTTTCAAGTATGCTTATTCATTGGCTTTGCAAGGAGGGGAAGGTTCGTGAGGCGAGGAAGTTGTTTGATGAGTTTGAGAGGAGTTCCGTTCCGAGTTTGTTGACTTATAATGCCTTGATCTCAGGGTTATGTGAGGTTGGGGAGTTGTGTAAAGTGGGAAGGTTGTGGGATGATATGGTCGAGAAAGGGTGTCATCCTAACGCTTTTACCTATAATGTGTTGATTAGGGGGTTTTGTAAGATTGGGAATCCCAAGGAGGGCATGAGGGTTTTGGATGAGATGTTTGCCAAAGGATGTTTTCCTAACGAAACTACTTATAGGATATTGATTGAGGGGCTGTTAGCCTTAGAATTGGATGCTGAAGTCATGGAGTTGCTTTATGTGGTTGTTAGCAAGGGAGGAAAGATTGATGCAAGTTCATGGAAAGTTCTTCTTGCCCACACTCTTGTTGATGTGGATACCGGCGCAGCTCTTGACAGTATCCTGCCCGAGAATGAGCATCATGACTCAGTCCTTGCAGTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23928.p1 GENE.R_Transcript_23928~~R_Transcript_23928.p1 ORF type:complete len:535 (+),score=68.85,PPR_2|PF13041.2|1.2e+03,PPR_2|PF13041.2|2.6e+03,PPR_2|PF13041.2|6.9e-07,PPR_2|PF13041.2|5e-12,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|9.4e-18,PPR_2|PF13041.2|0.0065,PPR_2|PF13041.2|0.0022,PPR_2|PF13041.2|7.7e-05,PPR_2|PF13041.2|1.5e-18,PPR_2|PF13041.2|9.8e-14,PPR_1|PF12854.3|8.8e+03,PPR_1|PF12854.3|3.2e-10,PPR_1|PF12854.3|0.0079,PPR_1|PF12854.3|1.2e-12,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|0.36,PPR_1|PF12854.3|2.3e-05,PPR_1|PF12854.3|0.00036,PPR_1|PF12854.3|2.6e-12,PPR_1|PF12854.3|0.019,PPR|PF01535.16|2.6e+03,PPR|PF01535.16|6.4e+02,PPR|PF01535.16|6.2,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|0.015,PPR|PF01535.16|4.6e-09,PPR|PF01535.16|4.7e-05,PPR|PF01535.16|0.17,PPR|PF01535.16|0.0002,PPR|PF01535.16|4.8e-06,PPR|PF01535.16|2.1e-08,PPR|PF01535.16|7e+02,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|27,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|53,PPR_3|PF13812.2|0.08,PPR_3|PF13812.2|5.8,PPR_3|PF13812.2|8.8e-06,PPR_3|PF13812.2|41,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|53,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|0.00026,PPR_3|PF13812.2|1e+04 R_Transcript_23928:290-1894(+)
MSTLFRQHLSTTDNCLLRCISTAPNSYKITPPIKPFPKTLSPKRLVSLINRQQNLDLALQIFNYASQNHPNSAHNYATYLSIITRLARARQFPQLETLLTQLQTHQPHIKCGEILFVTVIRNYGLASRPNDAVRTFLRAPRFAVNRSVRSLNCLLNALVQNKKFDWVYLIFKNCRTRFNVVPNIFTFNILVKALCKKGDVDGGIGLLDDMAGMGMIPNVVTYTTILGGFVEKRDMVGAERIFQMILDRGWVPDATTYTVLMDGYCKVGRLEDAIRVMDDMEENGVRANEITYGVMIEAYCKGRMSGEAVSLVGDMLERKYVPSSALCCKVIDLLCEEGKVEDACGLWRMLLKKNVTPDNGVSSMLIHWLCKEGKVREARKLFDEFERSSVPSLLTYNALISGLCEVGELCKVGRLWDDMVEKGCHPNAFTYNVLIRGFCKIGNPKEGMRVLDEMFAKGCFPNETTYRILIEGLLALELDAEVMELLYVVVSKGGKIDASSWKVLLAHTLVDVDTGAALDSILPENEHHDSVLAV*

Click here to download the sequence:
Link to NCBI Protein BLAST