Transcript Information: R_Transcript_239451.p2


Annotated TAIR IDAT3G20980.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7355963-7357966 | Forward length=405
E-Value1E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.20281067727465
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.6211356066996
Replicate 30.50421140612186
Condition 3: 24 Hour
Replicate 10.38263012046174
Replicate 20.24505843211753
Replicate 30.2431967187433


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_239451.p2 GENE.R_Transcript_239451~~R_Transcript_239451.p2 ORF type:3prime_partial len:180 (+),score=16.79 R_Transcript_239451:921-1457(+)
ATGACAGTGTGTGATGCTTGCATGGTGAACATCGAGGAGCCCATTGTTCAAGATGAGTCTTGGGTGATAGACTCAGCGGCTTCCTTTCATTGTTGCCCAAAGAAGAAAGCTTTCCATAGGTTCGAGTATGGAAGGTTCGGGAGGACTTACTTGGCAAACGGTAAGTCGGAGGCAATAGTGGGGAAGGGTGGTGTGATGTTCCCTACCGGGAATGGAGGTAGGATAGAGTTGCGCGATGTCAAGTTCATCCCGAGTTTGAAGAAAAGCTTGATATCCGTGAAGCAACTAGATCGAGATGGTTGCAAGGTGGCGTTCGAGGGAGGTTCCTGGAAGGTTGTCAAGGGAGCGATGGTCCTAGCTCGTGGCACGGGGAGAGGAACACTATACACCACGGCCGGGTGTACGGAAGAAGAGGCAACGATAGGGATGACGAGTGGAGCTTCGCAGGGAAATTCGTGTGGTCTGAATTCCATGCATGGTGGGGTGTTTTGCAGGGTACGACTCTCGCAGACCATTGAAGACCAGGATGCACGTGGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_239451.p2 GENE.R_Transcript_239451~~R_Transcript_239451.p2 ORF type:3prime_partial len:180 (+),score=16.79 R_Transcript_239451:921-1457(+)
MTVCDACMVNIEEPIVQDESWVIDSAASFHCCPKKKAFHRFEYGRFGRTYLANGKSEAIVGKGGVMFPTGNGGRIELRDVKFIPSLKKSLISVKQLDRDGCKVAFEGGSWKVVKGAMVLARGTGRGTLYTTAGCTEEEATIGMTSGASQGNSCGLNSMHGGVFCRVRLSQTIEDQDARG

Click here to download the sequence:
Link to NCBI Protein BLAST