Transcript Information: R_Transcript_239455.p1


Annotated TAIR IDAT3G20980.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7355963-7357966 | Forward length=405
E-Value0.0002
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.064777420495358
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_239455.p1 GENE.R_Transcript_239455~~R_Transcript_239455.p1 ORF type:5prime_partial len:378 (-),score=55.81,UBN2_2|PF14227.2|4.3e-33,UBN2|PF14223.2|2.2e-20 R_Transcript_239455:82-1215(-)
GAATGGAAGATCTTGGATCGGAAAGCACTAGGGGTGATGCGCAGGACATTGTCCATTAACGTGGCATTCAAAGTCAAAGATACGAAGACGACGAAGGAGTTGATTGAAACCTTGACCAACATGTATGAGAAGCCCTCCGCGGTGAACAAGGTATTTTTGATGCGTCGTTTATTTGATTTTGAGATGGTTGATGAGGGTTCCGCTGCTGACCATATTAATGACTTTAATTCGATCATAAGCCAATTGAGTTCCGTTGGGATTAATTTTGATGATGAAGTTCAAGCATTAATCTTGTTGTCCTCTTTACCTAAGACTTGGGATACTGCTGTGACGGCAATCAGTAATTCTTCTGGGAAGGAGAAACTGAAGTTAGTGGATGTGAGGGACCTAATCCTTAGCGAGGGAGTGCGAAGGAAAGAAGGTGAACCATCCGGGGGTGCATACAGTGTTCAAAGGGGTAGAGGGGGACAAAAGGGAGGAAACGGACATGGAGGGAGATCGAAGTCAAGGGGACGGGGTCACCCTACTTGCGGGGATTGTGATGAGGTGGGGCATATAGCGATATATTGTCCTAACCCAAAGAAGAGTGTTGAGAAGCAAAAAGGGAAGCAAGATCCCACAGCTGCAGCAGTTGTGAATTCAAGCGGGGAATCTAGCGATGAAGAGGTGACGGTATGTGATGCTTGTATGGTGAGCATCGAAGAACCACTTGTTCAAGATGAGTCTTGGGTGATAGATTCAGCGGCTTCCTTTCATTGTTGCCCAAAGAAGAAAGCTTTCCATAGGTTCGAGTATGGAAGGTTCGGGAGGACTTACTTGGCAAACGGTAAGTCGGAGGCAATAGTGGGGAAGGGTGATGTGATAGTCCCTACCGAGAATGGAGGTAGGATGGAGTTGCACGATGCCAAGTTCATCCCGAGTTTGAAGAAAAGCTTGATATCCGTGAAGCAACTAGATCGAGATGGTTGCAAGGTGGCGTTCGAGGGAGGTTCCTGGAAGGTTGTCAAGGGAGCGATGGTCCTAGCTCGTGGCACGGGGAGAGGAACACTATACACCACGGCCGGGTGTACGAAAGAAGAGGCAACGAGAGGGATGACGAGTGGAGCTTCACAGGGAAATTCGTGTGTGGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_239455.p1 GENE.R_Transcript_239455~~R_Transcript_239455.p1 ORF type:5prime_partial len:378 (-),score=55.81,UBN2_2|PF14227.2|4.3e-33,UBN2|PF14223.2|2.2e-20 R_Transcript_239455:82-1215(-)
EWKILDRKALGVMRRTLSINVAFKVKDTKTTKELIETLTNMYEKPSAVNKVFLMRRLFDFEMVDEGSAADHINDFNSIISQLSSVGINFDDEVQALILLSSLPKTWDTAVTAISNSSGKEKLKLVDVRDLILSEGVRRKEGEPSGGAYSVQRGRGGQKGGNGHGGRSKSRGRGHPTCGDCDEVGHIAIYCPNPKKSVEKQKGKQDPTAAAVVNSSGESSDEEVTVCDACMVSIEEPLVQDESWVIDSAASFHCCPKKKAFHRFEYGRFGRTYLANGKSEAIVGKGDVIVPTENGGRMELHDAKFIPSLKKSLISVKQLDRDGCKVAFEGGSWKVVKGAMVLARGTGRGTLYTTAGCTKEEATRGMTSGASQGNSCVV*

Click here to download the sequence:
Link to NCBI Protein BLAST