Transcript Information: R_Transcript_240741.p1


Annotated TAIR IDAT4G13650.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:7939611-7942898 | Reverse length=1064
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.83225935959339
Replicate 20.28285171545272
Replicate 30.68838900548023
Condition 2: 8 Hour
Replicate 10.50747906626415
Replicate 20.46343796562043
Replicate 30.67715853091599
Condition 3: 24 Hour
Replicate 10.78508563576605
Replicate 20.54852457344441
Replicate 30.86189925191927


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_240741.p1 GENE.R_Transcript_240741~~R_Transcript_240741.p1 ORF type:complete len:965 (+),score=169.28,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|4.2,PPR_2|PF13041.2|0.00013,PPR_2|PF13041.2|0.0014,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|7e+03,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|0.44,PPR_2|PF13041.2|9.9e-08,PPR_2|PF13041.2|12,PPR_2|PF13041.2|5.3e-09,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|36,PPR|PF01535.16|0.074,PPR|PF01535.16|1,PPR|PF01535.16|0.099,PPR|PF01535.16|0.13,PPR|PF01535.16|6.3e+02,PPR|PF01535.16|0.002,PPR|PF01535.16|8.3e-05,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|3.9e+02,PPR|PF01535.16|3.5e-07,PPR|PF01535.16|0.0015,PPR|PF01535.16|3.8e-07,PPR|PF01535.16|0.3,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|13,PPR|PF01535.16|1.8e-10,PPR|PF01535.16|0.12,PPR|PF01535.16|2.4e+02,PPR|PF01535.16|7.5e+03,PPR_1|PF12854.3|9.7,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|5.5e+02,PPR_1|PF12854.3|4,PPR_1|PF12854.3|9.8e+02,PPR_1|PF12854.3|7.2,PPR_1|PF12854.3|0.0096,PPR_1|PF12854.3|87,PPR_1|PF12854.3|0.00029,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|0.025,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.024,PPR_1|PF12854.3|5.3e+03,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|4.9e+02,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|1.9e+03,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|73,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|2.2,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|0.00059,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|6.4,PPR_3|PF13812.2|11,PPR_3|PF13812.2|7.3,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.0089,PPR_3|PF13812.2|28,PPR_3|PF13812.2|1.6e+03,DYW_deaminase|PF14432.2|1.5e-31 R_Transcript_240741:201-2897(+)
ATGGAAGCATTACATTTGTTTTCACAGATACTTATTGAAAATGTGGCTCCTGATGAATATACATTTGCCAGTGTATTGAAGGCATGTGGTGGTGATGCAGGGCAAAAGATTTGGTTTCGCAGCATTGAGCAAATTCATGCTAAGATTGTTCAATATGGCTTTGAAGATAGCAGGTTTGTGTGTAATCCGTTGATCGACTTGTACTCGAAAAATGGATTCATAGATTCCGCGAGACATGTTTTTGAGAGCTTAAGTCAGAGGGATAATGTTTCCTGGGTTGCTATGATATCTGGTTTATCTCAGAATGGGCAGGAAGTGGAATCTATTCTCTTATTCTGTGATGAGATGTACAAACATGGTATTTTCCCAACTCCGTATGTTTTGTCAAGCATTTTGAGTGCCTGTAGTAAGAAAGAGTTGTTTGACCTTGGACAGGAGTTTCATGCCCTCATTTTTAAGTGGGGTTTTGCATCCGAGGTATTCGTGTGCAATGCTCTTGTGACGCTTTATACTCGTTGGGGGTATGTGAAGTCTGCCTTGAAAATTTTTGAGAATATGAAATCCAAGGATAGAGTCTCCTATAATTCACTCATCTCAGGACTCGCTCTGCATGGATTTGAAGACCAAGCTCTTTCTTTGATCCAGAAGATGCAGTATGATTTCTTAAAACCAGACTGTGTTACCGTGGCAAGTCTTGTAAGTGCATGTGCATCAATTGGAGCGGTCAATAAGGGAAGACAGCTTCATTCATATGCATCAAAAGCTGGATTCTGTTCAGATATGATCATTGAAGGTTCTTTGCTAGATTTTTATGTCAGATGCTCTGATATCAAAACTGCATATGAATACTTTCTTACAACCAAGAGAGAAAATGTTGTCTTGTGGAATGTGATGATCGTAGCTTATGGTCAGGCAGGGAATCTGCATGAAGCATGTAAGATATTTTTGCAGATGCATAGGAAAGGCTTGGAACCTAATCAATACACATATCCAAGCATGCTGAGAACTTGTACTTCTGTTGGAGCTCTAGATTTGGGAGAACAGATTCATAGCCAAGTCATTAAGACTGGTTTTCAGTTTAACGAGTATGTTTGCAGTGTGCTCATCGATATGTATGCTAAGCATGGGCTCCTGGATACTGCTCAGAAGATTTTTAGGAGGCTCACTGAGAATGATATTGTCTCTTGGACAGCTATGATTGCTGGATATGCACAACATGAAATGTATGTCCATGCTCTCAGACTTTTTGAAGAGATGATGTGCCAAGGGATCCAAGCAGATAATATAGGTCTCTCAAGTGCGATCAGTGCATGTGCTGGCATTCAAGCACTCAACCAAGGTCAGCAGATTCATGCCCAATCATATATCCATGGTTATTCTGATGATCCTTCTATACAAAGTGCTCTAGTGAGTTTGTATGCTAGATCTGGCAGAGTTCAAGATGCTTACTTTGCATTTGAAAAGATGGATGTGAAAGACAATATATCTTGGAATGCACTGATTTCAGGTTTTGCACAAAGTGGGCATTGTGAAGAAGCATTGTGGGTGTACTTTGAGATGAATAAAGCGGGTATAGAAGCTAATTTGTTTAGTTACAGCTCCTCAATCAGTGCTGCCTCTAATACAGCAAATGTCAAACAAGGAAAGCAGATACATGCGAAGTTAATCAAAACTGCTTATAATTCGGAAACTGAAGCTTCAAATGCCCTGATCTCACCCTATTCAAAGTGTGGGTGTATTGATGATGCTAAAAGAGAGTTTTCTAGAATGAATGAAAGGAATGAGGTCACATGGAATGCCATGATTACAGGATATTCTCAGCATGGTTGTGGGAGAGAGGCATTGGAGATCTTTGAGGAGATGAAGAAGGTTGGTGTGGCACCAAATGGTGTCACGTTTGTGGGGGTATTGACAGCCTGCAGCCACGTGGGGTTAGTGGAAGAGGGGCTAAGCTACTTTGAATCCATGAGCAAAGAACATGGTTTATTGCCAAAACCAGAACATTACGTTTGTGTGGTAGATATACTTGGACGGGCTGGCTTTCTGACCCGTGCTAGAAAATTTATTGAAGATATACCTATTGAACCAGATGCAATGGTTTGGAGAACACTTTTGAGCGCTTGCACTGTCCACAAGAACAAAGAAGTTGGGGAGTTTGCCGCTAATAACTTATTGCAGTTGGAACCTGCAGACTCAGCAACATATGTTCTCATATCAAATATGTATGCAGTGAACAGAAATTGGACCAACAGGGATGTGGCCAGGAAAATGATGCGAGACAGGGGGGTCAAAAAGGATCCTGGTCGTAGCTGGATTGAAGTCAAGAACTCAATCCATTCCTTCTATGCTGGGGATGAGCTTCATCCTCTAGCGGATAAGATTTATGAGTTTTTGGGGGATTTGAATAAGCATGTAGCAGAAACTGGTTATGTGCAAGATGAATACAGCATATCTGTTGAGGAGGAGAAGGGGCAGGCATTCAATGTTCATAGTGAAAAGCTGGCAATTGCTTTTGGATTACTAAGCTTGTCCAACGCGACTCCTTTCCATGTGATGAAGAATCTCCGGGTCTGTGTTGATTGCCATAATTGGATCAAGTGTGTATCTAAGATCTCAAATCAGGTCATTATTGTGAGGGATGCATACCGCTTTCATCATTTTGATAGTGGTGCATGTTCATGTAAGGATTACTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_240741.p1 GENE.R_Transcript_240741~~R_Transcript_240741.p1 ORF type:complete len:965 (+),score=169.28,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|4.2,PPR_2|PF13041.2|0.00013,PPR_2|PF13041.2|0.0014,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|7e+03,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|0.44,PPR_2|PF13041.2|9.9e-08,PPR_2|PF13041.2|12,PPR_2|PF13041.2|5.3e-09,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|36,PPR|PF01535.16|0.074,PPR|PF01535.16|1,PPR|PF01535.16|0.099,PPR|PF01535.16|0.13,PPR|PF01535.16|6.3e+02,PPR|PF01535.16|0.002,PPR|PF01535.16|8.3e-05,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|3.9e+02,PPR|PF01535.16|3.5e-07,PPR|PF01535.16|0.0015,PPR|PF01535.16|3.8e-07,PPR|PF01535.16|0.3,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|13,PPR|PF01535.16|1.8e-10,PPR|PF01535.16|0.12,PPR|PF01535.16|2.4e+02,PPR|PF01535.16|7.5e+03,PPR_1|PF12854.3|9.7,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|5.5e+02,PPR_1|PF12854.3|4,PPR_1|PF12854.3|9.8e+02,PPR_1|PF12854.3|7.2,PPR_1|PF12854.3|0.0096,PPR_1|PF12854.3|87,PPR_1|PF12854.3|0.00029,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|0.025,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.024,PPR_1|PF12854.3|5.3e+03,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|4.9e+02,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|1.9e+03,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|73,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|2.2,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|0.00059,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|6.4,PPR_3|PF13812.2|11,PPR_3|PF13812.2|7.3,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.0089,PPR_3|PF13812.2|28,PPR_3|PF13812.2|1.6e+03,DYW_deaminase|PF14432.2|1.5e-31 R_Transcript_240741:201-2897(+)
MEALHLFSQILIENVAPDEYTFASVLKACGGDAGQKIWFRSIEQIHAKIVQYGFEDSRFVCNPLIDLYSKNGFIDSARHVFESLSQRDNVSWVAMISGLSQNGQEVESILLFCDEMYKHGIFPTPYVLSSILSACSKKELFDLGQEFHALIFKWGFASEVFVCNALVTLYTRWGYVKSALKIFENMKSKDRVSYNSLISGLALHGFEDQALSLIQKMQYDFLKPDCVTVASLVSACASIGAVNKGRQLHSYASKAGFCSDMIIEGSLLDFYVRCSDIKTAYEYFLTTKRENVVLWNVMIVAYGQAGNLHEACKIFLQMHRKGLEPNQYTYPSMLRTCTSVGALDLGEQIHSQVIKTGFQFNEYVCSVLIDMYAKHGLLDTAQKIFRRLTENDIVSWTAMIAGYAQHEMYVHALRLFEEMMCQGIQADNIGLSSAISACAGIQALNQGQQIHAQSYIHGYSDDPSIQSALVSLYARSGRVQDAYFAFEKMDVKDNISWNALISGFAQSGHCEEALWVYFEMNKAGIEANLFSYSSSISAASNTANVKQGKQIHAKLIKTAYNSETEASNALISPYSKCGCIDDAKREFSRMNERNEVTWNAMITGYSQHGCGREALEIFEEMKKVGVAPNGVTFVGVLTACSHVGLVEEGLSYFESMSKEHGLLPKPEHYVCVVDILGRAGFLTRARKFIEDIPIEPDAMVWRTLLSACTVHKNKEVGEFAANNLLQLEPADSATYVLISNMYAVNRNWTNRDVARKMMRDRGVKKDPGRSWIEVKNSIHSFYAGDELHPLADKIYEFLGDLNKHVAETGYVQDEYSISVEEEKGQAFNVHSEKLAIAFGLLSLSNATPFHVMKNLRVCVDCHNWIKCVSKISNQVIIVRDAYRFHHFDSGACSCKDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST