Transcript Information: R_Transcript_240779.p1


Annotated TAIR IDAT5G40390.1
Annotated Gene NameRaffinose synthase family protein
Annotated Gene Symbol(s)SIP1
Annotation TypeHomolog
Chromosome Positionchr5:16161720-16165085 | Forward length=783
E-Value5E-91
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.22259708481364
Replicate 20.064013111025299
Replicate 30.069837614622416
Condition 2: 8 Hour
Replicate 10.37326013639093
Replicate 20.13634684049503
Replicate 30.77476386794335
Condition 3: 24 Hour
Replicate 11.0498997207792
Replicate 20.874141358468
Replicate 30.80076968366697


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_240779.p1 GENE.R_Transcript_240779~~R_Transcript_240779.p1 ORF type:3prime_partial len:328 (+),score=-7.93,Raffinose_syn|PF05691.8|6.6e-102 R_Transcript_240779:85-981(+)
ATGGCTCCAATTCTAACCAAAGGAGCATTAGAAGCAATTGGCCTTGTTGATGATGATACCCCTTTACAATCATCAATTACTCTCCAAGGTTCAACTTTTTTTGCTAATGGCCACCCAATTTTAACCCAAGTCCCTTCTAACATCATTGCCACTCCTTGCTTTCACAATCTCATGAACAAACCCATTAGTACCAATACTGATGCATGCTTCGTCGGCTTCCACGTGGATCAATCTGACAGTCGCCACGTGCTCCCCATCGGCAAGCTCCACGGTATCCGGTTCATGAGCATTTTCCGGTTCAAGGTCTGGTGGACCACCCACTGGACCGGCTCCCGCGGCAACGACGTTGAGCACGAGACCCAGATGCTGATGCTGGACAAGAGCCCCGACGACGGCGACCGTGGCCGCCCCTACGTCCTCCTCCTCCCCATCCTCGAGGGCCCCTTCCGGGCCTCCCTCCAGCCCAGCCCGGCCCGCGACGACGACCTCTACCTCTGCGTGGAGAGCGGGTCGGCCAGGGTGGTCGGGTCCTCGTTCCGGAGTTGCCTCTACATGCGGGCCGGGCAGGACCCGTTCGACCTGGCCCGGGACGCGGTCCGGGACGTCCGGGCCCACCTGGGGACGTTCGAGGTCCTACAGGAGAAGACCCCACCGGGTATATTGGACAAGTTTGGTTGGTGCACATGGGATGCATTTTACCTCAAGGTAGACCCGAATGGAATCAAAGAAGGCGTTAAGAAGCTAACACAAGGTGGGTGCCCACCCGGGTTCGTCCTGATAGACGACGGGTGGCAGTCCATATGCCACGACTTCGACCCGATAACCCGGGAGGGCATGGACCTGACGTCACCCGGTGAACAGATGCCATGTAGGCTGGTAAAATACCAGGAGAATCAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_240779.p1 GENE.R_Transcript_240779~~R_Transcript_240779.p1 ORF type:3prime_partial len:328 (+),score=-7.93,Raffinose_syn|PF05691.8|6.6e-102 R_Transcript_240779:85-981(+)
MAPILTKGALEAIGLVDDDTPLQSSITLQGSTFFANGHPILTQVPSNIIATPCFHNLMNKPISTNTDACFVGFHVDQSDSRHVLPIGKLHGIRFMSIFRFKVWWTTHWTGSRGNDVEHETQMLMLDKSPDDGDRGRPYVLLLPILEGPFRASLQPSPARDDDLYLCVESGSARVVGSSFRSCLYMRAGQDPFDLARDAVRDVRAHLGTFEVLQEKTPPGILDKFGWCTWDAFYLKVDPNGIKEGVKKLTQGGCPPGFVLIDDGWQSICHDFDPITREGMDLTSPGEQMPCRLVKYQENH

Click here to download the sequence:
Link to NCBI Protein BLAST