Transcript Information: R_Transcript_240780.p1


Annotated TAIR IDAT5G40390.1
Annotated Gene NameRaffinose synthase family protein
Annotated Gene Symbol(s)SIP1
Annotation TypeHomolog
Chromosome Positionchr5:16161720-16165085 | Forward length=783
E-Value8E-109
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.67796712117527
Replicate 20.35993657856511
Replicate 30.32723910851646
Condition 2: 8 Hour
Replicate 10.069959614134986
Replicate 20.31944116915979
Replicate 30.36303221240774
Condition 3: 24 Hour
Replicate 10.91831228910816
Replicate 20.3780901524099
Replicate 30.56282669194879


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_240780.p1 GENE.R_Transcript_240780~~R_Transcript_240780.p1 ORF type:3prime_partial len:350 (+),score=29.98,Raffinose_syn|PF05691.8|3.1e-118 R_Transcript_240780:104-1150(+)
ATGGCTCCAAGTCTAACCAAAGGAGCATTAGAAGCAATTGGCCTTATTGATGATACACCTAAACAATCATCATCATCATCAATTACTCTTCAAGGTTCAACTTTTTTTGCTAATGGCCACCCAATTTTAACCCAAGTCCCTTCTAACATCATTGCCACTCCTTGCTTTGACAAGGAAATCCACAAACCCAATAGTGCTGTCTGCTTCGTGGGGTTCCACGTGGACCAACCCGACAGCCGCCACGTCGTCCCCATCGGCAAGCTCCACGGCATCCGGTTCATGAGCATTTTCCGGTTCAAGGTCTGGTGGACCACCCACTGGACTGGCTCCCGCGGCAACGACGTCGAGCACGAGACCCAGATGCTGCTGCTGGACAAGAGCCCCGACGATGACGACGGCGGCCGTCCCTACGTCCTTCTGCTTCCCATCCTTGAGGGCCCCTTCCGGGCCTCCCTCCAGCCCGGTCCGGCCAGCGACGACAGCCTCTGCCTCTGCGTGGAGAGCGGGTCCGTTCAAGTGGCCGGGTCGTCGTTCGAGAGCTGCCTCTACATGCGGGCCGGCCCGGACCCCTTCGACCTGGCCCGGGACGCGGTGCGGGACGTCCGGACCCACCTGGGGACGTTCGAGGTCCTACAGGAGAAGACCCCACCGGGTATATTGGACAAGTTTGGTTGGTGCACATGGGATGCATTTTACCTCAAGGTGGACCCACAGGGTGTTTGGGATGGGCTTCGGGGCCTCGTCGAAAATGGGGCCCCACCCGGTCTTGTGCTCATTGACGACGGATGGCAGTCTATTTGTCATGATGATGACCCGATCAGTGACCAAGAAGGGATGAATCGGACATCTGCTGGTGAGCAGATGCCCTGCAGGCTCATCAATTATGAGGAGAACTATAAATTCAGGGACTACACAAGCTCAAAGAAATTGGGCCCAAATGGGCAGCCCAAGAAAGGAATGGGTGCCTTTGTAAGGGACCTCAAAGAGGAGTTCAAGAGTGTTGAGCATGTCTATGTTTGGCATGCCTTCATGGGCTACTGGGGTGGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_240780.p1 GENE.R_Transcript_240780~~R_Transcript_240780.p1 ORF type:3prime_partial len:350 (+),score=29.98,Raffinose_syn|PF05691.8|3.1e-118 R_Transcript_240780:104-1150(+)
MAPSLTKGALEAIGLIDDTPKQSSSSSITLQGSTFFANGHPILTQVPSNIIATPCFDKEIHKPNSAVCFVGFHVDQPDSRHVVPIGKLHGIRFMSIFRFKVWWTTHWTGSRGNDVEHETQMLLLDKSPDDDDGGRPYVLLLPILEGPFRASLQPGPASDDSLCLCVESGSVQVAGSSFESCLYMRAGPDPFDLARDAVRDVRTHLGTFEVLQEKTPPGILDKFGWCTWDAFYLKVDPQGVWDGLRGLVENGAPPGLVLIDDGWQSICHDDDPISDQEGMNRTSAGEQMPCRLINYEENYKFRDYTSSKKLGPNGQPKKGMGAFVRDLKEEFKSVEHVYVWHAFMGYWGG

Click here to download the sequence:
Link to NCBI Protein BLAST