Transcript Information: R_Transcript_240820.p1


Annotated TAIR IDAT2G13770.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:5736603-5737847 | Forward length=343
E-Value2E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.11776103841754
Replicate 20.13546000268579
Replicate 30
Condition 2: 8 Hour
Replicate 10.31594664448058
Replicate 20.5770550152564
Replicate 30.11710716529282
Condition 3: 24 Hour
Replicate 10.14811488534003
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_240820.p1 GENE.R_Transcript_240820~~R_Transcript_240820.p1 ORF type:3prime_partial len:155 (+),score=8.04,Plant_tran|PF04827.10|1.6e-14 R_Transcript_240820:85-546(+)
ATGGATTCTAATAATTCTAATTACGGAAATAGTCCTCCTTATCAAAGAAATCCAAATACTTTTGTAAACCCAAATCAACAAAATGATGCCGCTAATTTTCCGATTGATCCAAACCATCCGAATTTTGCAATAGTTATGCAATTATTGCAAGCTCAAACTCTAATCACACAACAAATTCCAAGTGTTCTACAAACTCGTTTCGCAATTCTCAGACAACCATCTTTGGCATGGGATAGAAGCATCCTTGGGAAGATTATGAAAGCATGTATCATTATGCACAATATGGTTGTCGAGGACGAACGGGCAACTCCTCACCATGGTCGCACCGAAGAATTTGACGAAGAAATCGACAATACCAACCATCTGGTAGCAACACAAACACAGAGGACATTGACTCCACAACTTTCTCTGCTCGTCCAACACATTTGCGGACATATATGGATAGAAGAGCTCGTGTTCGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_240820.p1 GENE.R_Transcript_240820~~R_Transcript_240820.p1 ORF type:3prime_partial len:155 (+),score=8.04,Plant_tran|PF04827.10|1.6e-14 R_Transcript_240820:85-546(+)
MDSNNSNYGNSPPYQRNPNTFVNPNQQNDAANFPIDPNHPNFAIVMQLLQAQTLITQQIPSVLQTRFAILRQPSLAWDRSILGKIMKACIIMHNMVVEDERATPHHGRTEEFDEEIDNTNHLVATQTQRTLTPQLSLLVQHICGHIWIEELVFV

Click here to download the sequence:
Link to NCBI Protein BLAST