Transcript Information: R_Transcript_240987.p1


Annotated TAIR IDAT3G24255.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8789471-8793208 | Forward length=746
E-Value8E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4686290423337
Replicate 21.1262383365064
Replicate 32.5013104271661
Condition 2: 8 Hour
Replicate 10.65670902157363
Replicate 21.5421297821507
Replicate 31.3909280168879
Condition 3: 24 Hour
Replicate 11.3194142084887
Replicate 20.97178343770743
Replicate 31.635288281205


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_240987.p1 GENE.R_Transcript_240987~~R_Transcript_240987.p1 ORF type:complete len:522 (+),score=67.63,RVT_1|PF00078.23|1.5e-26,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.4e-17,zf-RVT|PF13966.2|9.4e+03 R_Transcript_240987:3057-4622(+)
ATGAAAATTGACCTCAAAAAAGCCTATGATTCAGTTGACTGGGAATTTCTCCATGAGATGCTAGTAGCTTTAAATTTCCCTGCTGGTTTTGTTACTTGGCTGATGGCATGCACTAGTAGCTCTGCTTACACTATTGCTTTAAATGGGTGGTATCAAGGGTTCTTTAAAGGGGCTAAAGGTTTAAGGCAAGGTGATCCTCTTTCTCCAATCTTATTTGTGATATGCATGGAGTACCTAACTAGAATCCTTCAAGTGGTGGGAGAAATGCAGAATTTTTCCTTTCACCCTTTGTGTAAGAGTATGGCTCTAAACCACATCTGTTTTACGGATGACCTAATTTTGTTTTGTTCTGGAGATTATAAGTCTGTGAATCTTATATTGAGTGGATTTAAATGTTTTTATGAAACTTTTGGGTTAGAAATGAATAAGCAGAAATCAGCCATGTATTTAGGAGTGGTGGATCAGTGTAGGGAGGTTCTTTCACAGATTACAGGTCTTTCCATATCTGCCTTGCCTTTTTCGTATCTGAGGGTTCCTATTACCTCTAACAGGCTGTCTATTGTTGATTGTGACTGTTTAGTGGAGAAATTGACCTCCAGAATCAGACAAAGGAGATATCGACACCTTTCTTATGCTGGTAGACTGGTATTAATCAATGCTGTTTTGATGAGCTTGTATACTTACTGGGCTGCTATGTTCTTGATTCCCAAAACTGTGCTTCAGAAGATCATGACTGTGTGTAGGAATTTCTTATGGGGAGGCTCAGATTCTTATAAGAGTCCTCCTCCTATGGCTTGGGAATATATATGCCAAAAGAAAAAGCATGGAGGATTGGGGGTTAGAGATTGTATAGCAAGTAATCTGGTTGTGCTTGGTTGCTATGTCTCGGCAATTGCTTTAAAGGAAGACTCGTTATGGGTTAAATGGGTGCATAATGTATATATAACTCAAGATGATTGGTGGAATCACTCACCTCCTGTTGATGCTAGCTGGTCTTGGAAAAATATATGCAGGGTGAGGGATATCTTTAAGGATGGATTTAATGGCAGTTGCTGGCTTACCTCCCCCCATGGTAAATACAATTCAGCAAGTGGGTATGATTGGCTCAAACAGGAAGGAAGTAGAGTTATATGGGATAAGGTGGTTTGGAATAAATATAATATCCCTAAACACTCTTTTATTGCTTGGTTGTTTATGTTAGGAAAGGCTAAAACTAGAGATAATTTGCAGAAGATTGGAATATGTCTTGATACTACCTGCCCAATCTGTGATGGAGATAGAGAGACTATTGCTCATCTATTTTTTACATGCCCCTTCAATGCTATTTTGATCAAGCTTTTTTGTGAGTGGTTTGGAGTGTTGAAGAGTTCTTGGACTTCATCATCTTTCCCAAGATGGATGCTCAAGTACTCAGGCTTATCTAAAAGTAGGTCTGAAAGTGATGAATGCTGGATTTGTTGGTCTAATCTGCACAATCTGGAAAGCACGCAATGCTGCCATTTGGGAGAGAAATGTTCCAGTGCCGGAACAGATATTCAGCAATTTGCAAAAGAAGCTGCATGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_240987.p1 GENE.R_Transcript_240987~~R_Transcript_240987.p1 ORF type:complete len:522 (+),score=67.63,RVT_1|PF00078.23|1.5e-26,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.4e-17,zf-RVT|PF13966.2|9.4e+03 R_Transcript_240987:3057-4622(+)
MKIDLKKAYDSVDWEFLHEMLVALNFPAGFVTWLMACTSSSAYTIALNGWYQGFFKGAKGLRQGDPLSPILFVICMEYLTRILQVVGEMQNFSFHPLCKSMALNHICFTDDLILFCSGDYKSVNLILSGFKCFYETFGLEMNKQKSAMYLGVVDQCREVLSQITGLSISALPFSYLRVPITSNRLSIVDCDCLVEKLTSRIRQRRYRHLSYAGRLVLINAVLMSLYTYWAAMFLIPKTVLQKIMTVCRNFLWGGSDSYKSPPPMAWEYICQKKKHGGLGVRDCIASNLVVLGCYVSAIALKEDSLWVKWVHNVYITQDDWWNHSPPVDASWSWKNICRVRDIFKDGFNGSCWLTSPHGKYNSASGYDWLKQEGSRVIWDKVVWNKYNIPKHSFIAWLFMLGKAKTRDNLQKIGICLDTTCPICDGDRETIAHLFFTCPFNAILIKLFCEWFGVLKSSWTSSSFPRWMLKYSGLSKSRSESDECWICWSNLHNLESTQCCHLGEKCSSAGTDIQQFAKEAAW*

Click here to download the sequence:
Link to NCBI Protein BLAST