Transcript Information: R_Transcript_241539.p1


Annotated TAIR IDAT4G33170.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:15995701-15998673 | Reverse length=990
E-Value7E-148
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3317610997005
Replicate 20.5707148897134
Replicate 30.95035105906784
Condition 2: 8 Hour
Replicate 10.73562684390865
Replicate 20.86372504965953
Replicate 31.3763023789421
Condition 3: 24 Hour
Replicate 11.9706272298459
Replicate 22.1140233843615
Replicate 32.2545275213971


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_241539.p1 GENE.R_Transcript_241539~~R_Transcript_241539.p1 ORF type:5prime_partial len:699 (+),score=146.02,PPR_2|PF13041.2|0.002,PPR_2|PF13041.2|2.9e-07,PPR_2|PF13041.2|0.87,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|1.2e+04,PPR_2|PF13041.2|8.8e-10,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|0.027,PPR_2|PF13041.2|1.3e+02,PPR|PF01535.16|0.00042,PPR|PF01535.16|9.1e-05,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|0.0098,PPR|PF01535.16|8.4e-09,PPR|PF01535.16|0.045,PPR|PF01535.16|5.5e-06,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|53,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.047,PPR|PF01535.16|0.0013,PPR|PF01535.16|1.2,PPR|PF01535.16|7.8e+03,PPR_1|PF12854.3|0.033,PPR_1|PF12854.3|8.6,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|0.06,PPR_1|PF12854.3|0.00014,PPR_1|PF12854.3|3,PPR_1|PF12854.3|0.0043,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|9.1e-06,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.0053,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|0.0047,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|4.1,PPR_3|PF13812.2|2e+02,DYW_deaminase|PF14432.2|3.6e-34 R_Transcript_241539:3-2099(+)
TATTTGCCCTCTCCTATGAAATTTCAGAGGCTTTGGAACCTCAGTTCTTCAATACTAAAGGATCCTGAAGCCTTGGCCCAAATCATCCAAATGTTCACACAATCAAAGAAACTTACACATGGAAAACAGCTCCATGCCCAGCTCATTCGTTCAGTTCGTCAAGTATCCAAATATGTCAACAATCATTTGCTCAATATGTATGCTAAATGTGGGCAAGTCGAGTATGCCCATAAGGTGTTTGACAAAATGCCTCAACGAAACTTGGTGTCATGGACTGCAATGATCACTGCTTTTTCACAGAATGCACTGTACTTGAGAGCCTTAGAAACATTTTGTGAGATGAGGGGTTCAGGGGAAAGCCCGAATGAATTCGCTTTTTCGAGTGTTATTCAGGCGACGACAATGCTTGGAGATGTCGAGTTTGGGGGCCAAATGCATTGCCTTAGTGTGAAATGTGGGTTTAACCATGAATTGTTTGTGGGTAGTAATTTAGCTGACATGTATTCTAAGTGTGGGAAGATTCATGATGCTTGTAAGGTCTTTGAGGAGATGCCTTATAAGGATGAAGTTTCGTGGACCTCGATGATTGATGGCTATGCGAAAAATGGTGACTTTGAGGAGGCTTTGTTGGGTTTTAAGAAGATGTTGCTTGAGGGGATACATATTGATAATTATGTACTTTCTAGTGCTTTGAGTGCTTGCGGGGCGATGAGGGCTTTGGTGTTTGGAAAGAGTGTTCATTCCATGATTTTGAAGTCAGGCTTTGATGAGGAGACTTCTGTTGGCAATGCACTTGTTGATGTTTACTCAAAAGCGGGTGACATGGAGAGTGCTTCAAAAGTGTTTGGTGATGATTATAAGGGTATGAACATTGTGTCATATACTTCTTTGATTGATGGGTATGTTGAAGCCGAGCAAATAGAGAAAGCACTTGAGATTTTTGTGGAGTTGAGGCGGCAGGATGTGGAGCCTAATGAATTCACTTTTTCCAGTTTGGTCAAGGCTTGTGCTAATCAAGCTGCTCTTGAGCAAGGTTCACAGCTTCATGCTCAAGTAGTTAAAATGAATTTCATGGTAGACCCATTTGTTTTGTCTGCTCTGGTTTTTATGTATGGAAAGTGTGGGTTGGTCGAGCAATCTGCACTCTTGTTTAATCGTGTAGAAAATCCAACTGAATTTGCATGGAATTCTTTGCTGGGAGGGTTTTCTCAGCATGGTTTAGGGAAAGAAGCCATTAAAGTTTTCAAAAGAATGGTTCATCGAGGTATAAAGCCCTCCACAATAACCTTTATCAATCTCTTAATTGGTTGCAGCCATGCTGGGTTGGTCGAAGAAGGACTAGATTTCTTCAATACTATGGAGAGTGTTTATGGGGTGGCACCTACAGAAGTGCACTATTCTTGTGTAATTGATCTGCTTGGTCGAGCGGGGAAGCTCAAAGAAGCCGAGGAATTCATAAATAACATGCCTTTTGAACCAAATGCTTTTGGTTGGTGCTCATACCTAGGGGCTTGTAGGGTTCATGGTGATAAAGAAAGGGCTATAATAGCAGCAGAGAAACTACAAAGGCTAGAACCTGAAAACAGTAGTGCTCACATTTTGCTCTCAAACATCTATGCAAAGGAAAGACAGTGGGAAGAAGTAAGAAGTTTGAGGAAGATGATGAAGGATGGCAACCTAAAGAAGCTACCGGGGTACAGCTGGGTTGATGTTGGGAACAAAACCCATGTATTTGGTGCTGATGACTGTTCTCATCCTAAACAGACAGAGATTTATGAGAAGCTTGATAGTCTCCTTGAGGAAATAAAGAGAATTGGATATGTACCCCAAAAAGACGTCATCCCTATTATTACAGATGACATTACAAAGGAGAAGATGCTCCGAAATCACAGCGAAAAGATAGCTGTTGCATTTGCAGTAATGAGTCTGCCACCTTGGAAGCCTATCATCATCAAGAAGAACTTGAGGATATGTGCAGACTGTCACTCCGCCATCAAGCTAATGGCCAAGGTTGTAGGGAGAACTATAATTGTACGAGACATTAGCAGGTTCCATCATTTTTCTGATGGATCATGTTCCTGTGGAGATTACTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_241539.p1 GENE.R_Transcript_241539~~R_Transcript_241539.p1 ORF type:5prime_partial len:699 (+),score=146.02,PPR_2|PF13041.2|0.002,PPR_2|PF13041.2|2.9e-07,PPR_2|PF13041.2|0.87,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|1.2e+04,PPR_2|PF13041.2|8.8e-10,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|0.027,PPR_2|PF13041.2|1.3e+02,PPR|PF01535.16|0.00042,PPR|PF01535.16|9.1e-05,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|0.0098,PPR|PF01535.16|8.4e-09,PPR|PF01535.16|0.045,PPR|PF01535.16|5.5e-06,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|53,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.047,PPR|PF01535.16|0.0013,PPR|PF01535.16|1.2,PPR|PF01535.16|7.8e+03,PPR_1|PF12854.3|0.033,PPR_1|PF12854.3|8.6,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|0.06,PPR_1|PF12854.3|0.00014,PPR_1|PF12854.3|3,PPR_1|PF12854.3|0.0043,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|9.1e-06,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.0053,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|0.0047,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|4.1,PPR_3|PF13812.2|2e+02,DYW_deaminase|PF14432.2|3.6e-34 R_Transcript_241539:3-2099(+)
YLPSPMKFQRLWNLSSSILKDPEALAQIIQMFTQSKKLTHGKQLHAQLIRSVRQVSKYVNNHLLNMYAKCGQVEYAHKVFDKMPQRNLVSWTAMITAFSQNALYLRALETFCEMRGSGESPNEFAFSSVIQATTMLGDVEFGGQMHCLSVKCGFNHELFVGSNLADMYSKCGKIHDACKVFEEMPYKDEVSWTSMIDGYAKNGDFEEALLGFKKMLLEGIHIDNYVLSSALSACGAMRALVFGKSVHSMILKSGFDEETSVGNALVDVYSKAGDMESASKVFGDDYKGMNIVSYTSLIDGYVEAEQIEKALEIFVELRRQDVEPNEFTFSSLVKACANQAALEQGSQLHAQVVKMNFMVDPFVLSALVFMYGKCGLVEQSALLFNRVENPTEFAWNSLLGGFSQHGLGKEAIKVFKRMVHRGIKPSTITFINLLIGCSHAGLVEEGLDFFNTMESVYGVAPTEVHYSCVIDLLGRAGKLKEAEEFINNMPFEPNAFGWCSYLGACRVHGDKERAIIAAEKLQRLEPENSSAHILLSNIYAKERQWEEVRSLRKMMKDGNLKKLPGYSWVDVGNKTHVFGADDCSHPKQTEIYEKLDSLLEEIKRIGYVPQKDVIPIITDDITKEKMLRNHSEKIAVAFAVMSLPPWKPIIIKKNLRICADCHSAIKLMAKVVGRTIIVRDISRFHHFSDGSCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST