Transcript Information: R_Transcript_24160.p1


Annotated TAIR IDAT3G23890.1
Annotated Gene Nametopoisomerase II
Annotated Gene Symbol(s)TOPII, ATTOPII
Annotation TypeOrtholog
Chromosome Positionchr3:8624931-8631106 | Forward length=1473
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.549935179842
Replicate 214.793490266396
Replicate 318.374718179417
Condition 2: 8 Hour
Replicate 112.078155455135
Replicate 211.075107022283
Replicate 314.670312486598
Condition 3: 24 Hour
Replicate 131.099640611957
Replicate 223.687882361616
Replicate 329.885701756201


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_24160.p1 GENE.R_Transcript_24160~~R_Transcript_24160.p1 ORF type:complete len:1486 (+),score=354.20,DNA_topoisoIV|PF00521.16|6.1e-125,TOPRIM_C|PF16898.1|8.4e-46,TOPRIM_C|PF16898.1|1.1e+04,TOPRIM_C|PF16898.1|6.9e+03,DNA_gyraseB|PF00204.21|2.8e-24,HATPase_c|PF02518.22|2.5e-15,Toprim|PF01751.18|9.8e-07 R_Transcript_24160:294-4751(+)
ATGGCACCACCAAAGAAAATGCCGTTGCAAAGCAGCAACAACATCAACATCCTCTCACCACAAGAAGACATTTCAGCACCAACAGGAGGAAAAACAATCGAAGAGGTGTACCAAAAGAAAACCCAGCTCGAACACATCCTACTCCGACCCGACACCTACATCGGATCCATCGAGAAGCACGACCAGAATCTGTGGGTGTACGATCAGAATGAGCAGATGGTCTACAAGAACGTCAGCTACGTACCGGGTCTGTACAAGATCTTCGACGAAATCCTCGTAAACGCCGCCGATAACAAGCAGCGGGACCCGAAGATGGATCGGGTCGAGGTGGTGATCGATCAGGAAGAAAACCTAATCAGTGTGTACAACACCGGGGATGGGATTCCTGTTGAGATGCATAAAGAGGAAGGGGTTTATGTTCCTGAGTTGATATTTGGGCATCTTTTGACTAGTAGTAATTATAATGATCAGGAGAAGAAGACTACTGGTGGTCGTAATGGTTATGGTGCTAAACTTACTAATATTTTCTCCACTCGATTTGTTATTGAGACTGCTGATGGTAAACGTCAACTCAAGTACAAACAGGTGTTCACGGACAACATGGGTCAGAAAGGCGAACCTGAGATCAAAAAATGCAAGGCCAATGAGAACTGGACCAAAGTGACTTTCCACCCTGACTTGGCTAAGTTCAACATGATCCATCTTGAAGACGATGTTGTTGCCTTGATGAAGAAAAGGGTTGTCGATATGGCTGGATGCCTTGCTTCTTGTCCTGGCAAGAAAGTTAAAGTTTTTTTGAATGGTAAGGAGATTGAGGTCAAGTCGTTTCACGACTATGCTCAGCTTTACCTCAATACTGCCAACAGCAACAGAGATAATCCCTTACCCAGGATTGATAATAACACCAAGGAGGACGCTAATCCGAGGTGGCAGATCACTGTCAGTCAAAGTGATGGACAGTTTCAACAGGTTAGCTTTGTCAATAGCATCAACACAATCAAAGGTGGAACCCATGTTGACTACATAACAAATCAGATCACCAAGTATGTAATGGAGGCTGTCAAGAAGAAGAACAAGAATGCTAACCTCAAGCAGCATAATGTCAAGAACTATTTGTGGGTCTTTGTCAATGCTCTCATAGACAACCCTGCTTTTGATTCCCAGACCAAGGAAACTTTAACTACTCGCGCTAATAGTTTTGGAACTTCTTGTGAACTGTCAGACAAATTCCTCAAGAGAGTGGTGGATGGGTCTGGTGTGGTGGAAAGCCTCCTTTCATGGGCAGACTTTAAGCTTGCCAAAGATCTCAAGAAATCTGATGGGACGAAGACCCGAAGGATCCTAGATGTTCCAAAGCTAGAGGATGCCAACGAGGCCGGAGGAAGCAAATCTCATCAGTGCACCTTGATTCTAACTGAAGGAGATTCGGCCAAAGCACTTGCGATGGCTGGGCTTTCTGTTGTCGGACGAGACTACTATGGTGTGTTTCCTCTTAGGGGCAAGTTGCTGAATGTGAGGGAAGCAAGCCCTAAGCAGATCACTGAGAATGCTGAGATTAATAATCTGAAAAAGATTTTGGGACTGAAACAGGGAGAAAAGTATGACAAGGAAGGCAGCGTCAAGTCATTGCGGTATGGTCATCTAATGATCATGGCAGACCAGGATCATGATGGTTCGCATATTAAGGGCCTAATTATTAATTTCATTCACACATTTTGGCCGTCATTGCTGAGGAGTCCATCCTTCATGCTCGAGTTTATAACACCTATAGTGAAGGCAACTCGAGGAAACGGGAAGAATAAAGAGGTCATACCCTTCTACACCATGCCTGACTATGAGGACTGGGTGAAAAGCGTTGGTGGTAATCTAAAAAACTGGACCGTCAAGTATTATAAGGGGCTGGGAACAAGTGATGAAAAAGAAGGACAGGAGTACTTTGGAAATCTCCAAAGACACAGGAAGGTCTTCTTTTGGCATGACAACCACGATGGAGACGCAATTGAGCTGGCGTTTAGTAAGAAGAAGATTGAAGCAAGGAAGGATTGGCTTCGAGAGGAAGAGGCTGAGAATGTCCTTGATCACAAGGAAGAATTAATCAAGTATAGTGATTTTGTTCACAAGGAATTGAAACTGTTTTCAAGGGCAGACCTTCAGAGATCAATTCCTTCCATGGTTGATGGATTTAAGCCAACGCAGAGGAAAGTCCTCTTCGCTGCATTCAAGAGAAACTTGATAAATCAAATTAAAGTTGCTCAGTTCAGTGGTTATGTCTCAGAAAAATCATGTTATCATCACGGTGAACAAAGCATACAGACAACAATTGTGGGAATGGCTCAAACTTTTGTGGGTACCAATAACATCAATCTGTTTATGCCACATGGACAGTTTGGTACACGTAACCTGGGAGGAAAAGATGCTGCAAGTCCTAGGTATATTTTCACCAGGCTTGCAGAGATTACAAGATTCCTGTTCCACAAAGAGGATGATGTACTCCTTAATTACTTGAAGGAAGATGGCTTAATTATTGAGCCCACTTGGTACATGCCAGTTATACCAATGGTTCTAGTGAATGGATCTGAAGGAATTGGAACGGGTTGGAGTACATTTATTCCCAACTATAACCCAAGAGACATCATTGCTAATATCAGGCACTTGCTGGAAGGTGAGCCCGTAGAACCCATGGATCCTTGGTACAACAAGTTCAAAGGAACTATCCAGAAAACTGCAAGGAAAGAAACTGGAGTCACTTACACAGTTACTGGAACCATTGAGAAAATTAGTGAAGACGAGGATGATGAGGAACCAAGTGGCACAGATGTTACTCTTAAAATCACCGAGCTGCCAATTCGGAAGTGGACTCAAGATTATAAGGAATTTTTGTTGTCACTCCTCACACCCGCTGATAAAACCAAGGAAGGATTCATCAAGGAAATGAAGGATTACAGTACCAATGACAATGCATATTTTGAAGTTACGCTAAGCAGGACGAATTTCAACCTGGCCAAACAAGAGGGCTTGCTGAAGAAATTTAAGCTGACAAATACTCTCAGCACAAGTAATATGCACCTCTTTGATGAGGACAACAAGATTACCAGATATGAATCTCCTGAACAGATTCTGGAGAAGTTCTTCCAATTGAGGTTGCAGTACTATAAGAAACGAAAGGAAAAATACTTGGAGATCTATCAGTCCGAGCTGGTGAAGCTGGATAATCAAGTTAGATTCATCCTTGGGGTTGTGGAAGGTGAAATTATAGTTTGCAAGAGGAAGAAGGCTGAATTGGTGGATGAGCTGCGTCAGAAAGGTTTTACTCCTATTCCCAAGAATAAACCTGCTGCTGAGACAACAGAGGATAGCGAAGGGAATGAAGATACTGAGCAACAGGAGGACAATTCGGGGCATCATGCACACCTTAGTGACTATGATTATCTTCTGTCCATGGCAATTGGAAGCTTGACAATTGAGAAAGTAAAGGAGCTCTGTGCTAATAGGGATAGAGTTCTTGTGAAGATCGAAGAGTTGCAAAAGCACACCGAAAAGACTTTGTGGTTGAAAGACCTTGAAGCTCTTGAGAAAGCTCTTGATGAGAAAGACAAGAAAGAAGAAGAGGAGGCTAAAGATCAAAGTGTGACGAAGCAACCAACAAAAATGGTGCGCAAGAATAATAGAAATGTAACTAAACCAAAACCTGTTAAGGAAAGCTCTAGTTCATCAGTTCCTGTGACAGAAACAGCTCCTGAACAAGCAAAGGCTAAAGGCAGGGCAGGTCCCAAGAAAGCTGCTTCTAAGAAGGGAAAACTTCCTGTTGTGGAGAGTGATGAGGAAGATGAGGATTTCCCTGATCTGAGAGAACGACTAGCGCAATATCACCTGGATTCCTCCCCTGATAACTCAGCTGCAATGGAAACTGATGTAACTGAAGCAGCAGCTACAAAGAAAGGATCTCAACGAGCTGCTGCCAGTAAGCCCTTGGCTGTTGAAGATATTTCAGACAATGATGATAGTCAGGACGTGTCTGAAATAGTCACTGTCCCAGAAGCTGGAAAGAAGGGGAGGGGCAGAACTGCAAAAGCCAAGGAACCCAAACAAACTGCAGCCGTGAAAAAACGAGGGCCAGCCACTAAGAAGTCTCAGCTCCCAGGACAGAAGTTGATCACTGAGAGCTTCAAGGCTTCAGAAAGTTCAGAGAACTCGCCTGACAAGAAGGTGAGAAGAATGAGGCAATCCCCATTCAACAAAAAAAGTGGGTCTGTATTGAACAAAGGTGAGGCAGCTACTTCCACAGAGAGCATAAATCTAGACATCATTGAAGAAGTGAGTGAAATTGTGCCTCCAAGGGCTAGACCTCAGCGGGCTCGGAAGCAGCCTACTACATATGTTCTCAGCGATTCGGACAGCGAGGAGTCTGAGCAGCCATCTGAGGATTATTCTGAGACAGAGGATGATGAGGACTATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_24160.p1 GENE.R_Transcript_24160~~R_Transcript_24160.p1 ORF type:complete len:1486 (+),score=354.20,DNA_topoisoIV|PF00521.16|6.1e-125,TOPRIM_C|PF16898.1|8.4e-46,TOPRIM_C|PF16898.1|1.1e+04,TOPRIM_C|PF16898.1|6.9e+03,DNA_gyraseB|PF00204.21|2.8e-24,HATPase_c|PF02518.22|2.5e-15,Toprim|PF01751.18|9.8e-07 R_Transcript_24160:294-4751(+)
MAPPKKMPLQSSNNINILSPQEDISAPTGGKTIEEVYQKKTQLEHILLRPDTYIGSIEKHDQNLWVYDQNEQMVYKNVSYVPGLYKIFDEILVNAADNKQRDPKMDRVEVVIDQEENLISVYNTGDGIPVEMHKEEGVYVPELIFGHLLTSSNYNDQEKKTTGGRNGYGAKLTNIFSTRFVIETADGKRQLKYKQVFTDNMGQKGEPEIKKCKANENWTKVTFHPDLAKFNMIHLEDDVVALMKKRVVDMAGCLASCPGKKVKVFLNGKEIEVKSFHDYAQLYLNTANSNRDNPLPRIDNNTKEDANPRWQITVSQSDGQFQQVSFVNSINTIKGGTHVDYITNQITKYVMEAVKKKNKNANLKQHNVKNYLWVFVNALIDNPAFDSQTKETLTTRANSFGTSCELSDKFLKRVVDGSGVVESLLSWADFKLAKDLKKSDGTKTRRILDVPKLEDANEAGGSKSHQCTLILTEGDSAKALAMAGLSVVGRDYYGVFPLRGKLLNVREASPKQITENAEINNLKKILGLKQGEKYDKEGSVKSLRYGHLMIMADQDHDGSHIKGLIINFIHTFWPSLLRSPSFMLEFITPIVKATRGNGKNKEVIPFYTMPDYEDWVKSVGGNLKNWTVKYYKGLGTSDEKEGQEYFGNLQRHRKVFFWHDNHDGDAIELAFSKKKIEARKDWLREEEAENVLDHKEELIKYSDFVHKELKLFSRADLQRSIPSMVDGFKPTQRKVLFAAFKRNLINQIKVAQFSGYVSEKSCYHHGEQSIQTTIVGMAQTFVGTNNINLFMPHGQFGTRNLGGKDAASPRYIFTRLAEITRFLFHKEDDVLLNYLKEDGLIIEPTWYMPVIPMVLVNGSEGIGTGWSTFIPNYNPRDIIANIRHLLEGEPVEPMDPWYNKFKGTIQKTARKETGVTYTVTGTIEKISEDEDDEEPSGTDVTLKITELPIRKWTQDYKEFLLSLLTPADKTKEGFIKEMKDYSTNDNAYFEVTLSRTNFNLAKQEGLLKKFKLTNTLSTSNMHLFDEDNKITRYESPEQILEKFFQLRLQYYKKRKEKYLEIYQSELVKLDNQVRFILGVVEGEIIVCKRKKAELVDELRQKGFTPIPKNKPAAETTEDSEGNEDTEQQEDNSGHHAHLSDYDYLLSMAIGSLTIEKVKELCANRDRVLVKIEELQKHTEKTLWLKDLEALEKALDEKDKKEEEEAKDQSVTKQPTKMVRKNNRNVTKPKPVKESSSSSVPVTETAPEQAKAKGRAGPKKAASKKGKLPVVESDEEDEDFPDLRERLAQYHLDSSPDNSAAMETDVTEAAATKKGSQRAAASKPLAVEDISDNDDSQDVSEIVTVPEAGKKGRGRTAKAKEPKQTAAVKKRGPATKKSQLPGQKLITESFKASESSENSPDKKVRRMRQSPFNKKSGSVLNKGEAATSTESINLDIIEEVSEIVPPRARPQRARKQPTTYVLSDSDSEESEQPSEDYSETEDDEDY*

Click here to download the sequence:
Link to NCBI Protein BLAST