Transcript Information: R_Transcript_24347.p1


Annotated TAIR IDAT1G50500.2
Annotated Gene NameMembrane trafficking VPS53 family protein
Annotated Gene Symbol(s)HIT1
Annotation TypeOrtholog
Chromosome Positionchr1:18708217-18715597 | Reverse length=847
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 133.533485565786
Replicate 224.364826297321
Replicate 327.548875010089
Condition 2: 8 Hour
Replicate 123.452082953091
Replicate 223.143108105835
Replicate 329.800171356269
Condition 3: 24 Hour
Replicate 134.478250902885
Replicate 228.679817954213
Replicate 331.128593276058


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_24347.p1 GENE.R_Transcript_24347~~R_Transcript_24347.p1 ORF type:complete len:829 (+),score=187.83,Vps53_N|PF04100.8|5.5e-146,RINT1_TIP1|PF04437.9|2.5e+03,RINT1_TIP1|PF04437.9|1.4e+02,RINT1_TIP1|PF04437.9|1.6e-08,COG7|PF10191.5|8.8e+02,COG7|PF10191.5|3.2e-06 R_Transcript_24347:110-2596(+)
ATGATGTCGGTACCACGATCGATGGATAAATCAAGTGCTCTTGATTACATTAACCAGATGTTTCCCACTGAGGCATCACTATCTGGAGTGGAGCCTCTTATGCAAAAAATACACGGTGAGATTCGTAGGGTGGATGCTTCCATACTAGCAGCTGTTCGACAACAGAGTAATTCAGGTACGAAAGCTAAAGAAGATCTTGCTGCTGCCACACATGCAGTGGAGGAACTCATGTACAAAATACGAGAAATAAAATCCAAGGCTGAACAAAGTGAGACGATGGTTCAAGAAATTTGCCGTGACATTAAGAAACTTGACTTTGCGAAGAAGCACATAACAACTACTATCACAGCTCTTCATCGTCTTACCATGTTGGTATCTGCTGTTGAGCAACTACAAGTAATGGCTTCAAAGAGGCAATATAAGGAGGCAGCTGCTCAATTGGAGGCTGTGAACCAGTTATGTAGTCATTTTGAAGCATACAGGGATGTCCCAAAAATAACAGAGTTGCGGGAGAAGTTCAAGAACATTAAGCAAATCCTAAAGTCTCATGTACTTTCAGACTTCTCAAGTTTAGGTACAGGGAAGGAGACAGAAGAAACTAATTTACTGCAGCACCTATCAGATGCTTGCTTAGTGGTTGACGCTTTGGAGCCCTCTGTTCGTGAAGAGCTTGTTAAGAATTTCTTCAGCAGAGAACTTTCATCGTACAGCCAAATTTTTGATGGAGCTGAACTTGCAAAGTTGGACAAAACAGAAAGGAAATATTCATGGATCAAGCGTCGGTTAAGAACAAATGAGGAGATATGGAAAATCTTTCCTTCTTCGTGGCATGTTCCTTATCTACTTTGCATCCAGCTTTGCAAGCTGACAAGAACTCAACTTGTGGAGATACTTGATAATATGAGGGAAAAACCTGATGTGGGGACTCTATTGCTGACACTTCAACGAACTCTGGAGTTTGAAGAAGAGCTGGCGGAGAAGTTTGGTGGAAGTTCTCAAACTAAAGAGCCCAGGATTGACGCTGATGACTCAGAAAAAGGGGAGAATCCTAGCCAAGCTGCACTAGAAATTAGGAAGAAATACGAGAAGAAGCTCGCTGCACAAGGAAGTGGAAATGATGAAAAGGACAGTCAAAAAGATTATTCAGTGCCTGGAGCTGGGTTCAATTTCCGTGGAATTATTTCATCTTGCTTTGAACCTCACCTGACAGTGTATGTAGAACTGGAAGAGAGAACACTAATGGAGCATCTGGAGAAACTTGTACAGGAAGAAACTTGGGAAACTGAAGAAGGCAGTCAGACCAATATCTTATCCAGTAGCATGCAGGTCTTTTTGATTATCAGACGGAGCTTGAAGCGGTGCAGTGCTTTGACAAAGAACCAGACATTGTTTAATTTGTTTAAGGTGTTCCAAAAAATTCTAAAAGCTTATGCGACGAAGCTGTTTGCCAGACTACCAAAGGGTGGAACCGGAATTGTAGCTGCGGCCACTGGAATGGACGGACAAATTAAGACATCAGAGAAAGATGAAAGGACAATCTGCTATATTGTAAACACAGCTGAGTATTGTCATAAAACGTCTGGTGAATTGGCTGAAAATATATCAAAGATTATCGATTCTCAGTTTGCGGATAGAGTGGACATGTCCGAAGTGCAGGATGAATACTCAGTTGTCATCACAAGGTCACTGATAACACTGGTGAATGGTATTGAAACTAAATTTGATGCTGAAATGGCTGCAATGACACGTGTTCCTTGGGGAACACTTGAAAGTGTTGGTGACCAATCAGAGTATGTCAATGGCATAAACACAATCCTTACAAGTAGTATTCCTGTGCTTGGGAGTCTTCTTTCCCCAATTTACTTCCAGTTTTTCCTGGACAAGCTTGCTTCGTCACTAGGTCCACGCTTCTACCTTAACATTTTCAAATGCAAGCAGATATCAGAGACTGGGGCCCAGCAGATGCTCTTGGATACTCAAGCTGTGAAAACGATTCTGCTGGAGGTTCCTTCCCTTGCAAAACAAACTTCTGGTGCAGCGAGCTACTCTAAATTTGTTAGTCGTGAGATGAGTAAAGCTGAAGCCCTCTTGAAGGTTATATTATCTCCTGTTGATTCTGTGGCAGATACATATCGTGCTTTATTGCCAGAGGGAACTCCTTCAGAGTTTCAGCGTATTCTGGAGCTCAAGGGTCTCAAAAAGGCAGACCAGCAAACCATACTTGATGACTTCAACAAACATGGTCTGAGCATCAATCAATCATCTGTGGCTCCATCTGCTGTATCAGCTGCTCCCCCTCCGCCCATAACACCGTCTATTGTCAGCCCAGCTACATCCGCTATCGTTGCTTCTCGAGAGGACGTGCTTGCAAGAGCTGCTGCACTGGGCCGAGGAGCAGCAACTACTGGTTTCAAGAGGTTCCTTGCACTAACTGAAGCTGCCAAAGACCGAAAGGATGGACCTTTTAGGAAACTCTTCAATCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_24347.p1 GENE.R_Transcript_24347~~R_Transcript_24347.p1 ORF type:complete len:829 (+),score=187.83,Vps53_N|PF04100.8|5.5e-146,RINT1_TIP1|PF04437.9|2.5e+03,RINT1_TIP1|PF04437.9|1.4e+02,RINT1_TIP1|PF04437.9|1.6e-08,COG7|PF10191.5|8.8e+02,COG7|PF10191.5|3.2e-06 R_Transcript_24347:110-2596(+)
MMSVPRSMDKSSALDYINQMFPTEASLSGVEPLMQKIHGEIRRVDASILAAVRQQSNSGTKAKEDLAAATHAVEELMYKIREIKSKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDVPKITELREKFKNIKQILKSHVLSDFSSLGTGKETEETNLLQHLSDACLVVDALEPSVREELVKNFFSRELSSYSQIFDGAELAKLDKTERKYSWIKRRLRTNEEIWKIFPSSWHVPYLLCIQLCKLTRTQLVEILDNMREKPDVGTLLLTLQRTLEFEEELAEKFGGSSQTKEPRIDADDSEKGENPSQAALEIRKKYEKKLAAQGSGNDEKDSQKDYSVPGAGFNFRGIISSCFEPHLTVYVELEERTLMEHLEKLVQEETWETEEGSQTNILSSSMQVFLIIRRSLKRCSALTKNQTLFNLFKVFQKILKAYATKLFARLPKGGTGIVAAATGMDGQIKTSEKDERTICYIVNTAEYCHKTSGELAENISKIIDSQFADRVDMSEVQDEYSVVITRSLITLVNGIETKFDAEMAAMTRVPWGTLESVGDQSEYVNGINTILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYLNIFKCKQISETGAQQMLLDTQAVKTILLEVPSLAKQTSGAASYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPSEFQRILELKGLKKADQQTILDDFNKHGLSINQSSVAPSAVSAAPPPPITPSIVSPATSAIVASREDVLARAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNP*

Click here to download the sequence:
Link to NCBI Protein BLAST