Transcript Information: R_Transcript_245167.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46370108660948
Replicate 20.14547090357712
Replicate 30.37031677407175
Condition 2: 8 Hour
Replicate 10.2261973667182
Replicate 20.30985055669079
Replicate 30.67072926079952
Condition 3: 24 Hour
Replicate 10.42416272014234
Replicate 20.40748746218157
Replicate 30.55603868719601


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_245167.p1 GENE.R_Transcript_245167~~R_Transcript_245167.p1 ORF type:3prime_partial len:433 (+),score=86.09,UBN2_3|PF14244.2|9.3e-19,UBN2_3|PF14244.2|2.9e+03,Retrotrans_gag|PF03732.13|1.8e-05,Retrotrans_gag|PF03732.13|6.9e+03 R_Transcript_245167:130-1425(+)
ATGGTTACTTCTTGGTTGTTGAATGCTCTTTCTAAAAACATAGCTGAGAGTGTCTTGTATTGTAATTCTGCCCATGCTATCTGGAAAGATCTTTGTGAGAGGTATGGCCAAACAAATGGAGCCCAACTGTTTCAGACTCAGAAAGATGTGTGTAACATGAGTCAAGGGGACAACAATATTTCTTCCTATTTCATGAATGCTAAAAGACTTTGGGATGAACATAATGCTGTACATATTCTCCCTGCTTGTACATGTGGTTTAGCTGCTGAATGGCAAAGATATATGGATAGACTGAAGTTAATGCAGTTTCTGATGGGGCTCAATGAAGATTATATACCTACCAGAGGCAATATTCTGATCCAGGTTCCTCTACCAAATTTAAATCAAGCATATTCCATGCTTCTACAAGATGAGGCTCAAAAGGAAATTCATGCAAGTACAAAGTTCAATACAGATTCGGCTTCTTTTCATGTTTCAGCTAACAAATATCCTCAAAGATTCTCTCAAACAAGACCTCCTTCCAATTTTGATCAAATACCTCCTTCCAATTTTGATAACAAAAGGTCCATTTTGACTTGTACTTACTGCAAGAAGCCTGGGCATTCTATTAAACAGTGCTATAAGTTGAATGGTTTCCCATCCAACTTCAAGTTCTCAAATCCCAAATTCAAGAAAATGGCTGCTCATGTTGATGGTTACTCTTCAGAATTGGGTGAAACAGGTTCTGACATTCAACCTAGTTCTTCAACTCCTACTCTCACTCCGGAACAAACTTTTCAGCTTCTGGCACTTCTCAACAACAATTCCAATTCTGATTCTCAAGTCAGCAGTAATGGTTTTTCTGGTGGTTCGATCAACACTGCTTCTGTTTCTCAATTTTCAGGTCAGACTTCTTCATTCTATTCTCATGATGTTTCTTGTTTTTGCAATATGTGCAATGTAGTTGCTAAATCATGGATCATTGACACTGGGGCCAGTGATCATATGTGTTGTGATCAATCTCTTTTTAAACACATTTCTTCTCTTCCTCTTCCTTACAATGTCTCACTTCCTAATGGTAATGTCTTAACTGTTACTCATGCTGGCACAATCTGTTTACTTCCTGAGCTTACATTACATGAAGTTTTATTTGTTCCAACATTCAAATGCAATTTGTTGTCCATTCCAAAATTGACTAAACAAGTATCTTGTTCTATTTCTTTCTCATCCACCCTCTGCATGCTGCAGGCCCCTTCAATGAAGAGGCCCTTGGTTCTTGGTAAGCAGCAGGGGGGTCTCTACCTTCTACATCCCACA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_245167.p1 GENE.R_Transcript_245167~~R_Transcript_245167.p1 ORF type:3prime_partial len:433 (+),score=86.09,UBN2_3|PF14244.2|9.3e-19,UBN2_3|PF14244.2|2.9e+03,Retrotrans_gag|PF03732.13|1.8e-05,Retrotrans_gag|PF03732.13|6.9e+03 R_Transcript_245167:130-1425(+)
MVTSWLLNALSKNIAESVLYCNSAHAIWKDLCERYGQTNGAQLFQTQKDVCNMSQGDNNISSYFMNAKRLWDEHNAVHILPACTCGLAAEWQRYMDRLKLMQFLMGLNEDYIPTRGNILIQVPLPNLNQAYSMLLQDEAQKEIHASTKFNTDSASFHVSANKYPQRFSQTRPPSNFDQIPPSNFDNKRSILTCTYCKKPGHSIKQCYKLNGFPSNFKFSNPKFKKMAAHVDGYSSELGETGSDIQPSSSTPTLTPEQTFQLLALLNNNSNSDSQVSSNGFSGGSINTASVSQFSGQTSSFYSHDVSCFCNMCNVVAKSWIIDTGASDHMCCDQSLFKHISSLPLPYNVSLPNGNVLTVTHAGTICLLPELTLHEVLFVPTFKCNLLSIPKLTKQVSCSISFSSTLCMLQAPSMKRPLVLGKQQGGLYLLHPT

Click here to download the sequence:
Link to NCBI Protein BLAST