Transcript Information: R_Transcript_245480.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value3E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.14094950544184
Replicate 20.3242671878965
Replicate 30.088443002301747
Condition 2: 8 Hour
Replicate 11.3235602674187
Replicate 20.60434815786988
Replicate 31.7520859672188
Condition 3: 24 Hour
Replicate 10.1772803646927
Replicate 20.42577719865979
Replicate 30.42254256152311


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_245480.p1 GENE.R_Transcript_245480~~R_Transcript_245480.p1 ORF type:complete len:259 (+),score=24.29,LRR_8|PF13855.2|0.069,LRR_8|PF13855.2|1.7e-06,LRR_8|PF13855.2|5.6e-08,LRR_8|PF13855.2|6.7e+02,LRR_1|PF00560.29|0.8,LRR_1|PF00560.29|0.074,LRR_1|PF00560.29|1.1e+04,LRR_1|PF00560.29|3.4,LRR_4|PF12799.3|3,LRR_4|PF12799.3|2e-05,LRR_4|PF12799.3|0.0057,LRRNT_2|PF08263.8|1.1e-07 R_Transcript_245480:46-777(+)
ATGAGGAGCCCACGAAACCTCTTAATTTCTCTGATAATTTGCTGTACTCTAATGGCGATTGCCCAGTCCACGGATTTCCCGGTTTGCCATGCAGATGACCGAGCCGTGCTCCTCCAAATCAAAGCCAAAATCGCAAACCCTAATGCCAGCCTTGGTTCCCTTGACGATTGGCAACCCGACACAGACTGCTGTTGGTGGAACTTCGTGGGCTGCCTTCCGGACGGAACCGTCAACACCGGCCGTGTCAACGCCGTCACCATCTCCGCTGGAAGTGGCCTTGTGGGCAAAATCCCGGACGAGATCGGGAACCTGCCTTTCCTAGAGGAGATTATGTTCATTGATGAGCCTAGGCTTACAGGAACACTGCCACAGTCCATGAGCAAGCTCAAGAGGCTTCAAATCATCTATCTTTCTTCCAACAATCTTTCTGGACCGATCCCGGAATTTCTTGGCCGGCTTAAGAACCTCCAGGAAGTTGATCTCTCTGGCAACAAGTTTTCCGGAGTCATCCCGCCTTCTCTATCTCGCCTATCAAAACTCTCCTCCTTTATTGTTTCGCGGAATGTGTTAGAGGGTTCGATCCCGAAAATGCAAACCAAGAAACTCACGACCTTCGATGTTAGCTTCAATCAGCTTTGCGGGGCGATTCCTGCTGAATTAAGCAAGTTTAATTCAACTAGTTTTGCGCACAACAAGTGTCTTTGTGGTTCTCCTTTGGCTGCTTGCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_245480.p1 GENE.R_Transcript_245480~~R_Transcript_245480.p1 ORF type:complete len:259 (+),score=24.29,LRR_8|PF13855.2|0.069,LRR_8|PF13855.2|1.7e-06,LRR_8|PF13855.2|5.6e-08,LRR_8|PF13855.2|6.7e+02,LRR_1|PF00560.29|0.8,LRR_1|PF00560.29|0.074,LRR_1|PF00560.29|1.1e+04,LRR_1|PF00560.29|3.4,LRR_4|PF12799.3|3,LRR_4|PF12799.3|2e-05,LRR_4|PF12799.3|0.0057,LRRNT_2|PF08263.8|1.1e-07 R_Transcript_245480:46-777(+)
MRSPRNLLISLIICCTLMAIAQSTDFPVCHADDRAVLLQIKAKIANPNASLGSLDDWQPDTDCCWWNFVGCLPDGTVNTGRVNAVTISAGSGLVGKIPDEIGNLPFLEEIMFIDEPRLTGTLPQSMSKLKRLQIIYLSSNNLSGPIPEFLGRLKNLQEVDLSGNKFSGVIPPSLSRLSKLSSFIVSRNVLEGSIPKMQTKKLTTFDVSFNQLCGAIPAELSKFNSTSFAHNKCLCGSPLAACK*

Click here to download the sequence:
Link to NCBI Protein BLAST