Transcript Information: R_Transcript_245687.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value1.7E-49
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33491671476548
Replicate 20.19262660932383
Replicate 30.210153555928
Condition 2: 8 Hour
Replicate 10.89856385127505
Replicate 20.61543711489502
Replicate 30.49958561340515
Condition 3: 24 Hour
Replicate 10.63186625397351
Replicate 20.80936729873678
Replicate 30.60241389046506


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_245687.p1 GENE.R_Transcript_245687~~R_Transcript_245687.p1 ORF type:5prime_partial len:109 (-),score=24.62 R_Transcript_245687:46-372(-)
TCACTAGTTGTGTCCTTTACTCAATCTCAGGTCATTGAGAGTGATGCTCAACCAGGTGATCTCTGTACACGTCGTGAGTATGCCCGTTGGCTAGTTTCTTCTAGTAGTGCTCTGTCACGAAACTCAATTTCAAAGGTCTATCCTGCTATGTACATAGAAAATGTTACTGAGCTTGCATTTGATGATATCACACCTGAAGATCCAGATTTCACATGCATCCAAGGCTTGGCAGAAGCGGGTTTGATTTCTAGCAAGCTTTCAAAACGTGATATGCTTTCTTCTCCTGAAGAGGAGATAGGCTCCTTTTTCTTCCATCCTGATAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_245687.p1 GENE.R_Transcript_245687~~R_Transcript_245687.p1 ORF type:5prime_partial len:109 (-),score=24.62 R_Transcript_245687:46-372(-)
SLVVSFTQSQVIESDAQPGDLCTRREYARWLVSSSSALSRNSISKVYPAMYIENVTELAFDDITPEDPDFTCIQGLAEAGLISSKLSKRDMLSSPEEEIGSFFFHPDR*

Click here to download the sequence:
Link to NCBI Protein BLAST