Transcript Information: R_Transcript_24604.p1


Annotated TAIR IDAT3G01460.1
Annotated Gene Namemethyl-CPG-binding domain 9
Annotated Gene Symbol(s)MBD9, ATMBD9
Annotation TypeOrtholog
Chromosome Positionchr3:173316-182038 | Forward length=2176
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8105197880437
Replicate 22.0085866290066
Replicate 32.5702240217408
Condition 2: 8 Hour
Replicate 12.933487619965
Replicate 22.9487975606391
Replicate 33.9678755446443
Condition 3: 24 Hour
Replicate 14.238522299974
Replicate 22.9676499445971
Replicate 33.9039759365543


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_24604.p1 GENE.R_Transcript_24604~~R_Transcript_24604.p1 ORF type:complete len:2237 (+),score=507.47,PHD|PF00628.25|0.0061,PHD|PF00628.25|5e-12,MBD|PF01429.15|1.2e-08,MBD|PF01429.15|6.2e+03,WHIM1|PF15612.2|8.5e-07,DDT|PF02791.13|3e-06,DDT|PF02791.13|7.9e+03 R_Transcript_24604:920-6712(+)
ATGTCAGATGTTGCCTGTTATCTTGGGTTGGCATCCAATGGAAATTTTGTGGAGCCTGAAACATGGAATAATGATTGCTCTGCTTTACGTCGGAATGGGTTACATCTACCAAAAAGAAGGAAGCTGACAAGGCTTCCTGTACGCAATGGTTTCACTGAGAATAGGGACAATTTGACTAGTGGCTTTAATAATGGTTTCTTGTCCAATGTTCAAGCTGAGCAGTTTTCCAGAGGCAAGTCTGGGAAAATGTGTGAAATTACAGAAGTTGTGCATGAAGAAAATTGCGTCAACGACTTTCATCAGTTTCACGAAGGACTTCCCCTTCAGTATGAAGATTTTTTCATTCTTTCCTTGGGGAAGATTGACACAAGAGCATCATATCATGACACCAATCAGATTTGGCCTGTGGGCTATAGGTCATGTTGGCATGATAAAATTACTGGTTCCCTCTTTCTGTGTGATGTCTTGGATGGTGGGGACTCTGGACCTATTTTCAAGGTCAGGAGGTTCTCATGCTCTGCTCTGCCCATTCCTTATGGGTCAACTATTTTGCATAGGCAAAGCAATCTTCAACTAGATTGCTCAAATAGAGATGAAAGAGAAAAGGTGATGACCTTAGATGAAGAAAGTTGTGTTGAAATGTTTCTCGCAGATCCTGGTGTTTCGGTGGAAGGTGATGCCCTAGCGTGGCTTCTCAATAGTCCTAGTGATGTTGATGGTCAAAAGCCTAGCCGCTACCAACCTGATGATTTCTTGGCTCATAATTCACCTGTGGGGGAAAAGATTGGTGAATTTGTAGTAGATGGCCGGTCATCATCATTGGTTTGGAACATTTTGTCTCAGAAACTCGCTGATGCTTGCCTGCAAAGATACAAGCAGACAGGATCTTTAGAGTTCTTCTGCAAACATGTGAAAGATGGAATGTCATCATTTTATGACATCATGAATGAGAAGAACAAAGAGATGTTTTCATCACTGGATAAGTTTAGCAGTTTGTTAGGATCCTTGAAGGCCCCTTTTGTTGTGAATAGCGATGATGAACTTAATTCAACTGTTGAAGCTTTGAAGAATTGGATGAATCTGGACAGATTTGGACTGGATATAGAATTTGTTCAGGAACTTATAGAGCAATGTCCTGAAGTCCATCGATGTTCACGATATGAGTCTTTAAAGAGGAGAAATGGTTATTTAAGATCACCGTTGGTTGGAAATGGTTGTTTCCTCATTAATGGAAAGAGTTTAGAGCAATGTAAAAATGATCCTGTGTTAGAGGGCTTGTACAGAGAATACAAGGTCGACAGGGAATCTTCTGATGATAATCATTGCCGTCCCCCTGGCAAGCATTTGGGTATGAAGCTTCCACCGAATCTTGTCGGTGATGTCCTCCAGATCTGGGAGTTATTATGCCGTTTCCATGAGATTTTGGGTTTGGAGCCTCTGAAGTTCGATGAACTTGAGGCAGAACTCTTACGACCATGGTTTGAGAGCTTGTCTCAGCATAAGTCTTGTGAAAGAGATTCTCCTGGTGGTGCTGAGGTTATTTCTGCTGATGGATCTAATCTTCTGAGTGAACAAGCTTCATCATCAAGCAGCGAAATTGATCGACCTGAGGAGAACAGATTCATTGAGATGGAAACTGCAGCTATGAGGGAAGATGCTCAAGCCAGACTAGCACTGACAACTTGCAGTAAGTGTGCGTGTGTGTCATTGAGGGCGGCACACATCTCATTACTAGATGTGCTCGTGAGTGAGCTGCAGATAAAAGTGGCTGCTGTTGTGGATCCCACTATCGATGGAGAGTCCAAGTCGAGACGGGGTAGGAAGAGAGATGTTGACAGCTCTATACTTGCAATAAGACCAAAGCTCAATCTGCTTCCTCTTAATGAGCTGACCTGGCCAGAATTAGCTCGCAGATATATCTTAGCTGTGCTTTCCATGGATGGCAATCTTGAATCTGTAGAAAATGGTCTCCGTGAATGTGGCAAGGTCTTTCGCTGCTTACAGGGTGATGGCGGTGTCCTTTGTGGATCCCTTGTGGGGGTGGCAGGAATTGAAGCAGATGCACTGCTTCTTGCAGAAGCTTCAAAACGAATTTATGGATATCTGAGCAGTGAAAATGATGTTCTGGTCATAGAAGATGATGATCCTGAATCAGTTACTGCTTCTGGAAGAACATCACTTACTAATGGTAACATTCCAGAGTGGGCTCAGGCTCTAGAGCCTGTGAGGAAGTTGCCTACTAATGTCGGAACAAGAATCAGAAAGTGCGTGTATGAAGCTCTGGAGAAGGATCCACCAGAATGGGCAAGAAAGATACTGGAGCATTCAATTAGCAAGGAGGTTTACAAGGGCAATGCTTCTGGACCTACCAAGAAAGCTGTTCTATCTGTGCTAACGGATGTAATCAGTGAAGGGTCACAACAGAAAACTCTTATAGAAAAAAAGAAGACTATTTTGTCAATACCTGACATCATAACAAAGAGGTGCCGTATTCTCTTACGTCGTGCTGCTGCTGCTGATGAAGAGAAGATATTCTGTAATTTGCTTGGCAGAAATTTGGTGAATTCTTCTGAGAATGATGATGAGGGACTTCTTGGATCCCCTGCAATGGTTTCTCGCCCTCTAGATTTTAGGACAATTGATTTGAGGCTGGCTGTTGGAGCCTATGGTGGATCGCATGAAGCCTTCCTTGAGGATGTTCGTGAGTTGTGGACAAATATACGCTCTGCACATGCGGAGCAGCCAGATCTGGTTCAGCTGGCCGACATGTTGTCCCAGAATTTTGAGTCACTGTATGAGGAAGAGGTTGTTGTTCTTGTTCGGAAACTTAAGGAGTATGCTGAATTGGAAGAGATAAGCACTGAAGCGAAAAAGGAGATTGGAGATATCGTTGCCTCTACAAGCGAGATTCCTAAAGCTCCATGGGATGAGGGTGTCTGCAAAGTCTGTGGTGTAGACAAAGATGATGATAGTGTTCTTTTATGTGACACTTGTGATGCAGAATATCATACTTACTGCTTGAATCCTCCGCTTGCTAGAATTCCAGAAGGGAACTGGTATTGTCCCTCATGTGTTTCTGGGGTAAATATGTTAAAAGTTGCTTCCAAAAGTGCTCAATTTGTTGGCGCACGACAGCGTAGAAAGTATCATGGAGAAGGAATCCGCAACTACTTGGAGGAGCTTGGACGATTAGCTGCTGTATTGGAGCAGAAGGAGTATTGGGAATTTAGTGTAGAGGAGAGGATTTTGCTCCTTAAGTTTTTGTGTGATGAGGTGCTGAATTCAATTCTCATCCGGCAGCATCTAGAGCAATGTTCCGAAATGTCAGCTGATCTACAGCAGAGGCTGCGGTTGTTTTATTCAGAGTGGAAAAATCTCAAGCTACGAGAAGATGTATTGGCTACTAAAGCTGCAAAACTCGGTATGAGTACCACAAATGTGGCTGGAGATTCTAATATGCAGGGGTTTATTGATACAGTCGCTAGCCACAGCACTTGCACAGGGCTTCAGTCTGCTGTAAGTGAGAGATCTGACCACATTACTTCTGTTCCTGATACTGTCTCTCAAGAAAAAGGTGGCGTGAATGCTTTGCATTCCAATAATCAGAATGGCAGCCAAAATGTCAAGCTCTTGGAGAGAACTTGTAACAGTGATGTTAAGCAGTCTGTAGATTTAGATTGTCAGGTGGAAGATATCGCCAAGGTTGTGAATGAAGATAGTAGCTTCCCTGAAAATTTTGATCTTCAGGAGAGGTTATCCAAACGCCAGAAAACATGTTCACTACAGGAATCTCCTGTGTCCAATCCTCTGCCACGTGAAACTGTCGGCACAGATGGTGAATCATCTTGCCATGTCAAAATGCAAGAAGTCTCTCCTGTGCGCAAATCTGAAGATCTACAAGGAGCTTCTGTTTCATCTACATGTGTGAACTCTGTTGCAGCTGATTCCAGTTCAAATGAGTTGCAGGCCTACACTTTGGACTTAATCGCTCTTCAGAAGGATCTATCTTCACTTCAGCAGTCAATTGCAACTGCAGAGTGTCAGCTTCTGAAGTCATCTGTCCGCATGGAATATCTAGGCAGTGATTGTTCTGGTCGAATGTATTGGGTCTCAGCCCAGCCAGGTTCACGTCCTTGCATTGTTGTTGATGGTACTATGGCCTTGCTACCTAAAACGCAAGGGATGATTCATGGGAGCATGGTGAGGGATGTTTCACATTTTGACAAGCCTGCTTCTTGTGGATCGGACAGATATACGAATGTTGGCGGTTCAAACATTTCTTGTCCGTTTGTTTACAGGGGAGATTGTTCTACCCCCACTTGCTCTCAGTGGGTCTCTTTTGATTCTGACTCTGAAATTAGGGAACTCATTAAATCATTGAAGGATAACCACCCGAAGGAAAGAGAACTGAAAGACTCAATTCTTCACTGGCAAAAGCTGAGATTTCATGAAATTCAGCCAACTGGAAGACAAGACCAGGCTCCTGTTGTTCCAGAGTCTTCTGAGAAAAAAGATGTGCGTAATCTGCTTGTCAGAGCATCCTCTGTGCTTGAGCATAAATACGGACCTTTCTTACGAGCAGATGAGGCCCATTTGAAGAAAAAATGGAAGCGATCAAGAGTAACCAATGACGAAAAACTGTACAGATGCCAATGTCTTGAACCTATCTGGCTTTGTAGACACCATTGTCTCTCCTGCCACCGAACCTTTTTCAGTGCTGAGGAACTCAACAAGCATAATGATAGTAAATGCAAATCAACTCCATCAGTTTCTGGGAAAAACAAGCTGAGTGATGAGCTGGTTGTTAGAAAATCAGAAACCCAGCAAGTTGCAGCAGGATTGGATACAATACAAGTATCCAGAAGTGCTGGGTCTGAGCCCTCACGATTGATTAAATATCAAAATGAGGAATCAATGTGCCCTTATAAATTTGAAGAAATAAGCTCCAAGTTCATCACAAATGATTCGATCAAAGAGTTGGTTAGTGGAATCGGATTAATTGGATCTGAAGGGACACCATCGTTTGTCCCATCCGTATCTCCTTATTTGAGTGATCCGGCACTGGTAGGTCTCCCTCAAGAGATCGTTGCTGTTGATAAATGCAATATCTCTGAGAAGGCTGTTGGGCATGTTGATCAAATTGCAGCTAAAGGCCACATTGATAGTGTGAGTGACGTCTACCATCGGAGAATCCAGACAAGCAAAACTGGTGAGAACTTAGAAACAGGGATTTCTTTACATGGAATTCAGGGTGAAAGAGGGAGTTTTAGTTGTGCATCTTCTATGGCAGCAGATCCCTGCTGTACAGTGTCGGAGTCTTCTTTGAGGCCATTGGCTGGCAGAGGTGCTCAAATTCTGAAACAACTGAAAATTAGCTTGCTTGACATGGAAGCCGCATTGCCGGAAGAGGCTCTTAGGGTATCCAAGGTTCATTCTGAGAGGAGAAGAGCTTGGCATGCTTTTGTGAAGGCAGCAAAAACAATATTTGAGATGGTACAGGCGACAATTGTACTTGAGGATATGATAAAGACACAGTACTTGAAAAACGAATGGTGGTATTGGTCATCACTCTCTGCAGCTGCCAAAACCTCGACATTGTCTTTGCTTGCCCTGCGTATCTATGCCCTGGATAATGCCATCATTTATGAGAGAACTGGAGCTGATTTAAATCAGACTTGCAGTTCAAGGCACAGTGGTGATGTAGATCAGCAATCATTGTCTAATTTGGATTCATCAGATAAATCGAGGCAAACCAGGAGAGCAACTAGGAAAAGGAAGGAGGCAGAAGGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_24604.p1 GENE.R_Transcript_24604~~R_Transcript_24604.p1 ORF type:complete len:2237 (+),score=507.47,PHD|PF00628.25|0.0061,PHD|PF00628.25|5e-12,MBD|PF01429.15|1.2e-08,MBD|PF01429.15|6.2e+03,WHIM1|PF15612.2|8.5e-07,DDT|PF02791.13|3e-06,DDT|PF02791.13|7.9e+03 R_Transcript_24604:920-6712(+)
MSDVACYLGLASNGNFVEPETWNNDCSALRRNGLHLPKRRKLTRLPVRNGFTENRDNLTSGFNNGFLSNVQAEQFSRGKSGKMCEITEVVHEENCVNDFHQFHEGLPLQYEDFFILSLGKIDTRASYHDTNQIWPVGYRSCWHDKITGSLFLCDVLDGGDSGPIFKVRRFSCSALPIPYGSTILHRQSNLQLDCSNRDEREKVMTLDEESCVEMFLADPGVSVEGDALAWLLNSPSDVDGQKPSRYQPDDFLAHNSPVGEKIGEFVVDGRSSSLVWNILSQKLADACLQRYKQTGSLEFFCKHVKDGMSSFYDIMNEKNKEMFSSLDKFSSLLGSLKAPFVVNSDDELNSTVEALKNWMNLDRFGLDIEFVQELIEQCPEVHRCSRYESLKRRNGYLRSPLVGNGCFLINGKSLEQCKNDPVLEGLYREYKVDRESSDDNHCRPPGKHLGMKLPPNLVGDVLQIWELLCRFHEILGLEPLKFDELEAELLRPWFESLSQHKSCERDSPGGAEVISADGSNLLSEQASSSSSEIDRPEENRFIEMETAAMREDAQARLALTTCSKCACVSLRAAHISLLDVLVSELQIKVAAVVDPTIDGESKSRRGRKRDVDSSILAIRPKLNLLPLNELTWPELARRYILAVLSMDGNLESVENGLRECGKVFRCLQGDGGVLCGSLVGVAGIEADALLLAEASKRIYGYLSSENDVLVIEDDDPESVTASGRTSLTNGNIPEWAQALEPVRKLPTNVGTRIRKCVYEALEKDPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLTDVISEGSQQKTLIEKKKTILSIPDIITKRCRILLRRAAAADEEKIFCNLLGRNLVNSSENDDEGLLGSPAMVSRPLDFRTIDLRLAVGAYGGSHEAFLEDVRELWTNIRSAHAEQPDLVQLADMLSQNFESLYEEEVVVLVRKLKEYAELEEISTEAKKEIGDIVASTSEIPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVSGVNMLKVASKSAQFVGARQRRKYHGEGIRNYLEELGRLAAVLEQKEYWEFSVEERILLLKFLCDEVLNSILIRQHLEQCSEMSADLQQRLRLFYSEWKNLKLREDVLATKAAKLGMSTTNVAGDSNMQGFIDTVASHSTCTGLQSAVSERSDHITSVPDTVSQEKGGVNALHSNNQNGSQNVKLLERTCNSDVKQSVDLDCQVEDIAKVVNEDSSFPENFDLQERLSKRQKTCSLQESPVSNPLPRETVGTDGESSCHVKMQEVSPVRKSEDLQGASVSSTCVNSVAADSSSNELQAYTLDLIALQKDLSSLQQSIATAECQLLKSSVRMEYLGSDCSGRMYWVSAQPGSRPCIVVDGTMALLPKTQGMIHGSMVRDVSHFDKPASCGSDRYTNVGGSNISCPFVYRGDCSTPTCSQWVSFDSDSEIRELIKSLKDNHPKERELKDSILHWQKLRFHEIQPTGRQDQAPVVPESSEKKDVRNLLVRASSVLEHKYGPFLRADEAHLKKKWKRSRVTNDEKLYRCQCLEPIWLCRHHCLSCHRTFFSAEELNKHNDSKCKSTPSVSGKNKLSDELVVRKSETQQVAAGLDTIQVSRSAGSEPSRLIKYQNEESMCPYKFEEISSKFITNDSIKELVSGIGLIGSEGTPSFVPSVSPYLSDPALVGLPQEIVAVDKCNISEKAVGHVDQIAAKGHIDSVSDVYHRRIQTSKTGENLETGISLHGIQGERGSFSCASSMAADPCCTVSESSLRPLAGRGAQILKQLKISLLDMEAALPEEALRVSKVHSERRRAWHAFVKAAKTIFEMVQATIVLEDMIKTQYLKNEWWYWSSLSAAAKTSTLSLLALRIYALDNAIIYERTGADLNQTCSSRHSGDVDQQSLSNLDSSDKSRQTRRATRKRKEAEG*

Click here to download the sequence:
Link to NCBI Protein BLAST