Transcript Information: R_Transcript_246756.p1


Annotated TAIR IDAT1G09910.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3220151-3224451 | Reverse length=675
E-Value5.1E-206
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.3642497751496
Replicate 20.23277494918291
Replicate 30.55870091697933
Condition 2: 8 Hour
Replicate 10.21716953390018
Replicate 20.29748401562553
Replicate 30.24148484195637
Condition 3: 24 Hour
Replicate 10.30542537331757
Replicate 20.14670903918344
Replicate 30.097062991959633


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_246756.p1 GENE.R_Transcript_246756~~R_Transcript_246756.p1 ORF type:complete len:451 (+),score=78.63,CBM-like|PF14683.2|1.3e+03,CBM-like|PF14683.2|1.4e-52,fn3_3|PF14686.2|6.6e-23,fn3_3|PF14686.2|5.1e+03 R_Transcript_246756:67-1353(+)
ATGGAAAGCCAAGATATAAGAGTTCATGGGTGGATTTGCAAAGACCCTCCAACTGGATTCTGGCAAATCACTCCTAGTTACGAGTTCCGTTCTGGTGGGCCCAACAAGCAGTTCCTCACCTCTCATGTCGGCCCATCCACTCTTGCTATGTTCGTGAGTGCCCACTACTCAGGGGAGGAGCTGGTGCCCAGATTTGCAGAGGGAGAACCTTGGAAACACATTTATGGTCCTGTTTTTATGTACATGAACAATGTCTCCAAATCTGATGATTTTCACTTGCTTTGGGATGATGCTAAAGAAAGGATGTTAATTGAAGTTAAAAGTTGGCCATATGATTTTCCTGCTTCAGAAGAGTTCCCAAAAACCAATGAGCGTGTTAATGTTACTGGCAGATTTTTCGTTCATGACAAATTTGTTACAAAAGAAAAGGTACCAGCAAAAGGTGCATTCATAGGACTTGGTCCACCTGGAGAACCGGGTTCCTGGCAAAGGGATTGCAAGACGTACCAATTCTGGACACGAACGGATGAAGAAGGTTATTTCAACATTACCTTTGTACGCGTTGGCAGCTATGATGTTCATGGTTGGGTCAATGGCTATATTGGAGACTTCAGGCACACCAGTCCTCTCAACATAACATTAGGTAAAAATGTCGATTTGGGTGAGCTTTTGTTTGAGCCACCAAGGGATGGGCCAACCCTATGGGAAATAGGCATTCCTGATCGTGTTGCTAAGGAGTTCTTCATTCCTGACCCTAACCCCAAGTATGTCAACAAGCTCTACGTCAATCATCCAGACAGATGGAGGCAATATGGATTATGGGAAAGATATGCTGAGATATATCCAAAGGATGACTTGGTTTATGACGTCAATGCTAGTGATTATAAGAAAGATTGGTTTTTCGCTCATGTCACAAGGCAAATTGGTGCAAGATATAATGGAACAACTTGGCAGGTCAAATTCAATCTTGATAATGTTGAACCAAATGCAAACTACAAGTTTAGACTAGCAATTGCTTCCGCTACCAATTCTGATTTAGAGATTCGATTCAACAAGCCCAAGCCAAGCCCACCAATATTTACAACAGGAAGAATAGGAAATGACAATTCAATTGCAAGACATGGTATTCATGGATTATATTGGCTATACAATATAGATGTGAAAGGAAATGAGCTCCAAAAGGGTAGTAATACCTTGTTTTTGACACAAACGAAAGGAACGAGCCCTTTCCAAGGAATTATGTACGATTATCTTCGACTTGAAGGCCCTCCTAGCAGCCCCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_246756.p1 GENE.R_Transcript_246756~~R_Transcript_246756.p1 ORF type:complete len:451 (+),score=78.63,CBM-like|PF14683.2|1.3e+03,CBM-like|PF14683.2|1.4e-52,fn3_3|PF14686.2|6.6e-23,fn3_3|PF14686.2|5.1e+03 R_Transcript_246756:67-1353(+)
MESQDIRVHGWICKDPPTGFWQITPSYEFRSGGPNKQFLTSHVGPSTLAMFVSAHYSGEELVPRFAEGEPWKHIYGPVFMYMNNVSKSDDFHLLWDDAKERMLIEVKSWPYDFPASEEFPKTNERVNVTGRFFVHDKFVTKEKVPAKGAFIGLGPPGEPGSWQRDCKTYQFWTRTDEEGYFNITFVRVGSYDVHGWVNGYIGDFRHTSPLNITLGKNVDLGELLFEPPRDGPTLWEIGIPDRVAKEFFIPDPNPKYVNKLYVNHPDRWRQYGLWERYAEIYPKDDLVYDVNASDYKKDWFFAHVTRQIGARYNGTTWQVKFNLDNVEPNANYKFRLAIASATNSDLEIRFNKPKPSPPIFTTGRIGNDNSIARHGIHGLYWLYNIDVKGNELQKGSNTLFLTQTKGTSPFQGIMYDYLRLEGPPSSPK*

Click here to download the sequence:
Link to NCBI Protein BLAST