Transcript Information: R_Transcript_246777.p1


Annotated TAIR IDAT4G24490.1
Annotated Gene NameRAB geranylgeranyl transferase alpha subunit 1
Annotated Gene Symbol(s)RGTA1, ATRGTA1
Annotation TypeOrtholog
Chromosome Positionchr4:12655330-12658103 | Reverse length=678
E-Value4E-241
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.8152791569991
Replicate 25.9733429349354
Replicate 38.1460660014767
Condition 2: 8 Hour
Replicate 15.2594105363215
Replicate 25.4073256230463
Replicate 38.5464909179916
Condition 3: 24 Hour
Replicate 17.5764029542352
Replicate 27.3099222212013
Replicate 38.3441036359722


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_246777.p1 GENE.R_Transcript_246777~~R_Transcript_246777.p1 ORF type:complete len:703 (+),score=122.82,PPTA|PF01239.18|1.5e-05,PPTA|PF01239.18|6.4e-09,PPTA|PF01239.18|4.9e-07,PPTA|PF01239.18|4.9e-10,PPTA|PF01239.18|3.6e-06,PPTA|PF01239.18|4e+03 R_Transcript_246777:140-2248(+)
ATGCATGGAAGACCCAGAAAACCCATAAAACCAGAAGATGAAGCAGCTTCAGTCGCCAAAGCCTCCAAATTACGTGCCCTTCAATCCCAGTTTCTTCACTTCCATCACAACAAAATATATGACAAAGAAGCAGTAGAGCTGAGTGCAAAGCTGTTGGAGACCAACCCAGAATTCTACACTGCTTGGAATTATCGCAAACTCGCTGTTGAATATTCACTGAGTCAACCCGGTTCCGATCCCGTTTCTCTTCTTAATGAGGAGCTCCGAGTTGTAGAGAGTGCACTCAGACAAAATTTCAAATCCTATGGAGCATGGCATCATCGCAAATGGGTGCTTAGCAGGGGTTATTCATCTGTAGATCATGAATTACGTCTTCTGGATAAGTTTCAGAAGGCCGATGCACGGAATTTTCATGCATGGAACTACCGCAGATATGTAGTAGAACTGAAGCATATTGCAGAAGTGGATGAGTTGAAGTATACAACTGATATGATAGAAAAAAATTTCAGTAATTATTCTGCGTGGCATAATCGAAGCATGATTCTGTCCAATTTGCTGAAAAAGAAAGCTGAAGGATTTTTTCCCAAAGAGAAGATCTTAACTGAGGAGTATGAACTAGTACACCAAGCAATTTTTACAGATCCAGATGACCAAAGTGGTTGGTTTTATCATCTTTGGCTACTTGAGCAAACAGTGACAAAGGATTCACCTTGGCTGGTCTCTTCCTGGCCTGCTCCACGTTCTGAGCTTATTGTATCAGCAAATAAAGCAGCACCTGATGATATGGTCTCACCATTCACAAGCTACTTGTCTAATGGAGGTACAATACCTGTGGTTCTCTATTTCAACCAAGCAGTCAAAGGTGTAAATTCAGCCACTGTTAATATCCGATCTGCAATTATAGAAAGTAGAGATATGGTTTGGAGACCTCTTTCAGGAAACAAATATGAGGGTGCTCAGGCATGGGTTGCATATCTGAAATTTTCCGATGTGCAAGTTGATTATTCCATGAGTTATCCAGTTGAAGTTAGCCTGGGAGACTCTCCTAAGATCATCTCTTTGAGTGGTTATCAGATGACTCAACATTTTCAAATTAAATTTATGGTCCGTTTTCAACAGCTGAATTCACAGCATGCAGAAGGCGGGAACATGAAGGCAATGTCATGGGACTATTTAGTTTTTCAAAAATGTGAGATGGTCCCTGACAAGTCAGATATGTTTTCCTCATTTAATCAATTGCAAATGAACAAGAGTCATGAACCTGTTGTTGCTAAGTGGCAGCTGGATATTTTGGCCAATGAGATTGAGCTCTTCCGCGAACTGCTATCAGCTATTGATTGCAAAATTGGAAAGCTGACACTTGCAAGATTGTTGACAACTCTTGATACATTGGTGTCAGACAGCAGTGCTTCAAATTCTTCCCAAATGACACATACTGAAGAAATTTTACCTTTGTATAATGATTTGATCAAATTAGATCCATCACATAAACAATACTACAAGGAAGAACACAGTTTAGCATTATTGCGTCAGGTTACTTGCTGCAAGGAGAATCTGTTGAGATATTGTTGGCGTCACAACAGCTCAGCCCAATCAGATAATGGGAACTTCATATGTATGCGTCTTAATAACCTATCACTAGCAAGGATAGGATCCATTAAGAATTTATTGTGGGTCCAAATGCTAGATCTCAGCCACAATGAACTTATATCTATTGAAGGGTTGGAAGCAATGCAACTGCTTTCTTGTTTGAACCTTAGTAACAACAAGATCAAGAGTTTTACTGCTCTAGAACCTCTAAGACATTTGAAGTCACTTAGAGCACTGAATATCTCAGACAATGAGATCGGGAAACATTCAATAGACACGACGAGGTATTTGTGCTCCTCTCCTTTGTCTCACACTGTGGCAAGTGACTGGAAGTCCAACATATCTTGTGTGGAGGATGCTCAACTGTCAAAATACTGGGATGCCTATCTCGTATTCAGAGATCTAAGTTTGACGCAGCTTGAGGTGTCAGGCAATGCAGTTGATGATGAAGATCTTAGATCATTCTTGCGCAAAATTTTGCCGACATTGAAGTGGCTTGATGGTAGAATTCATAGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_246777.p1 GENE.R_Transcript_246777~~R_Transcript_246777.p1 ORF type:complete len:703 (+),score=122.82,PPTA|PF01239.18|1.5e-05,PPTA|PF01239.18|6.4e-09,PPTA|PF01239.18|4.9e-07,PPTA|PF01239.18|4.9e-10,PPTA|PF01239.18|3.6e-06,PPTA|PF01239.18|4e+03 R_Transcript_246777:140-2248(+)
MHGRPRKPIKPEDEAASVAKASKLRALQSQFLHFHHNKIYDKEAVELSAKLLETNPEFYTAWNYRKLAVEYSLSQPGSDPVSLLNEELRVVESALRQNFKSYGAWHHRKWVLSRGYSSVDHELRLLDKFQKADARNFHAWNYRRYVVELKHIAEVDELKYTTDMIEKNFSNYSAWHNRSMILSNLLKKKAEGFFPKEKILTEEYELVHQAIFTDPDDQSGWFYHLWLLEQTVTKDSPWLVSSWPAPRSELIVSANKAAPDDMVSPFTSYLSNGGTIPVVLYFNQAVKGVNSATVNIRSAIIESRDMVWRPLSGNKYEGAQAWVAYLKFSDVQVDYSMSYPVEVSLGDSPKIISLSGYQMTQHFQIKFMVRFQQLNSQHAEGGNMKAMSWDYLVFQKCEMVPDKSDMFSSFNQLQMNKSHEPVVAKWQLDILANEIELFRELLSAIDCKIGKLTLARLLTTLDTLVSDSSASNSSQMTHTEEILPLYNDLIKLDPSHKQYYKEEHSLALLRQVTCCKENLLRYCWRHNSSAQSDNGNFICMRLNNLSLARIGSIKNLLWVQMLDLSHNELISIEGLEAMQLLSCLNLSNNKIKSFTALEPLRHLKSLRALNISDNEIGKHSIDTTRYLCSSPLSHTVASDWKSNISCVEDAQLSKYWDAYLVFRDLSLTQLEVSGNAVDDEDLRSFLRKILPTLKWLDGRIHR*

Click here to download the sequence:
Link to NCBI Protein BLAST