Transcript Information: R_Transcript_247781.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value0.0001
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.39253679472513
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.26328887040049
Replicate 20.24043958969017
Replicate 30.39035721764273
Condition 3: 24 Hour
Replicate 10
Replicate 20.47430664280811
Replicate 30.23535166329997


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_247781.p1 GENE.R_Transcript_247781~~R_Transcript_247781.p1 ORF type:3prime_partial len:93 (+),score=19.06,UBN2_3|PF14244.2|3.4e-11,Retrotrans_gag|PF03732.13|6.2e-08,UBN2|PF14223.2|2.3e-06 R_Transcript_247781:684-959(+)
ATGCGATTCCATGGTCTATTCATGGCTTATGAAATCGATTATAATCTTATACCCAGCTTATCAAACGCCATCTCAGTAAAAGCTCTATTTGAGGCAAAACCCTTGTGGGATGAACTTGAAGAAAGATTTTCTGTCACTAAAGCTGCTAGAATTTATCACTTGAAATCCGATTTGTCATCTTTGAAGCAAAGTGGTATGAGTGTTGAAACTTACCATCACAAGATGAAGGTCATATGGGATGAATTTGAACTTTACTACTATGATGGTTCTGTTTGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_247781.p1 GENE.R_Transcript_247781~~R_Transcript_247781.p1 ORF type:3prime_partial len:93 (+),score=19.06,UBN2_3|PF14244.2|3.4e-11,Retrotrans_gag|PF03732.13|6.2e-08,UBN2|PF14223.2|2.3e-06 R_Transcript_247781:684-959(+)
MRFHGLFMAYEIDYNLIPSLSNAISVKALFEAKPLWDELEERFSVTKAARIYHLKSDLSSLKQSGMSVETYHHKMKVIWDEFELYYYDGSVC

Click here to download the sequence:
Link to NCBI Protein BLAST