Transcript Information: R_Transcript_248410.p1


Annotated TAIR IDAT2G13600.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:5671493-5673586 | Forward length=697
E-Value1.5e-313
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.55990677775211
Replicate 20.12881165899569
Replicate 30.49186246372107
Condition 2: 8 Hour
Replicate 10.33799506829019
Replicate 20.3772541414924
Replicate 30.38975851025371
Condition 3: 24 Hour
Replicate 10.77464993713112
Replicate 20.60888751538404
Replicate 30.87282257953885


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_248410.p1 GENE.R_Transcript_248410~~R_Transcript_248410.p1 ORF type:5prime_partial len:652 (+),score=139.62,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|0.00083,PPR|PF01535.16|7e-07,PPR|PF01535.16|88,PPR|PF01535.16|0.21,PPR|PF01535.16|3.4e-08,PPR|PF01535.16|0.00059,PPR|PF01535.16|0.31,PPR|PF01535.16|7.8e-07,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|0.05,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|2.2,PPR|PF01535.16|0.011,PPR|PF01535.16|3e+03,PPR|PF01535.16|4.2,PPR_2|PF13041.2|0.0033,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|4.6e-09,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|8.4e-11,PPR_2|PF13041.2|0.048,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|1.1e-10,PPR_2|PF13041.2|0.098,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|3.9,PPR_2|PF13041.2|4.9,PPR_2|PF13041.2|2.2e+03,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|0.6,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|1,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|53,PPR_1|PF12854.3|0.0015,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|0.048,PPR_1|PF12854.3|0.62,PPR_1|PF12854.3|4.4e+03,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|32,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|6.5e+02,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.066,PPR_3|PF13812.2|9.6,PPR_3|PF13812.2|0.0049,PPR_3|PF13812.2|68,PPR_3|PF13812.2|1,PPR_3|PF13812.2|65,PPR_3|PF13812.2|13,PPR_3|PF13812.2|16,PPR_3|PF13812.2|21,DYW_deaminase|PF14432.2|1.1e+04,DYW_deaminase|PF14432.2|5.8e-08,TPR_19|PF14559.2|20,TPR_19|PF14559.2|1e+04,TPR_19|PF14559.2|3.2e+02,TPR_19|PF14559.2|6.5e+02,TPR_19|PF14559.2|32,TPR_19|PF14559.2|7.3e+03,TPR_19|PF14559.2|4.4e+03,TPR_19|PF14559.2|48,TPR_19|PF14559.2|31 R_Transcript_248410:2-1957(+)
ATACACAACAGGCTCATTGACATGTATGCTAAATGTGGGTACATTGAAGATGCACGTAAAATGTTTGATAAAATGCCTCAAAGAAACACTTTCAGTTATAATGCAGTTTTGAGTGCGTTGACGAGATGGGGTTTTGTTGAGGAAGCTGTGGGGGTGTTTGGGTCCATTCCAGAGCGCGATCAGTGCTCCTGGAATTGTATGGTTTCTGGGTTTGCTCAACATGGTAGGTTTGGTGAGGCTGTTGAGTATTTTGTGGGGATGCAGAAAGAGGGGATTTTGGTTAATCAGTACTCTTTTGGGAGTGTTCTTAGTGCTTGTGCTGGGTTGGGGGATTTGCAAATGGGGATTCAAGTTCATGGGTTGCTGTTGAAGGGGCTTTGTTTGATGATGGATGTGTATATGGGGTCTGCTCTTGTTGATATGTATGCTAAGTGTGGGGAAGTGACCTGTGCTCGACGAGTTTTTGAGGGGATGGCTGAAAGAAATAGAGTCACTTGGAATAGTCTCATTACTTGTTATGAGCAAAATGGTCCTGTTAGTGAGGCTGTTGAGATATTTAGAAAGATGATGGATCAAGGGGTGGACCCGGACGAGGTCACACTGGCGAGTGTGGTTAGTGCTTGCGCAACGTTAATGGCGTTAGGAGAAGGTAAGCAGATTCATGCTTTGGTTTTGAAAAATGAGAAGTTCAGGGATGACCTTATTTTAGGTAATGCTTTGGTTGATATGTATGCAAAATGTGGTAGAGTTAATGAAGCTAGATTCATCTTTGAAAGCATGCCATCTAGGAATGTAATAACTGAGACGTCCTTGGTAAGCGGCTATGCTAAAACCGCGAGCGTGGAGGCTGCAAACTTATTGTTTATGAAGATGATAGATAGGAACATAGTGTCTTGGAATGCACTTATGGCGGGATACACACAAAATGGAGACAATGAGAAGGCACTGAGCCTATTTTGCCAGTTGAAGAGGGAATCTGTTTGGCCCACCCATTATACTTTTGGGAATCTCCTCAATGCCTGTGCAAATCTCGCAGATATGCATCTTGGCATGCAGGCTCATACTCATGTATTGAAACATGGGTTTTGCTTCCGAGCTGGACCAGAACCTCACATCTTTGTGGGGAATGCTTTAATAGACATGTATATGAAATGTGGGTCAGTTGAAAATGCATTACTGGTGTTTCAAAATGTGGTAGAACGAGATCTTGTCTCATGGAATGCAATGATTGTAGGATATGCTCAAAATGGATATGGGATTGAAGCTCTTGAGATGTATAAGCAGATGATAGTATCTAATGAGGAACCTGACCATGTGACGATGATTGGAGTTCTATGTGCTTGTAGCCATGCTGGTCTTGTAGAAGAGGGCAGGCACTATTTCCGCTCAATGACAGAACTTCATGGTTTGCAACCATGGAAGGACCATTACACATGTATGGTTGATTTGCTTGGTCGAGCTGGATGCTTTGATGAAGCAAAACATTTAATTGAAACTATGCCAATGCAGCCTGATAATGTTGTATGGGCTTCTCTGCTTGCTGCTTGCAAAGTTCATCGGAATATTGAAATGGGGAAGTACGTGGCTGAGAAGCTATTGGAAATAGATCCTACTAACTCTGGTCCATATGTTCTGCTCTCAAACATGTACGCGGAGCTTGGAAGATGGAAGGAGGTTACTGGGGTTCGGAGGCTTATGGTGCAAAGGGGAGTTGTTAAGCAGCCAGGCTGTAGCTGGATTGAGATACAGAGCCGTGTGCATGTGTTCTTGGTTAAAGATGAAAGCCACCGCCAGAGAGAGGAGATCTACTTTGTCTTGAAAAGCCTTACCAAACAAATGAAAGTATCTGGCTATGTTCCTGCTACTGCAGACATAGAAATAGATGAGGAAGAGGGTGAGCATGAAGCATTTTCTGATTATTCAGTGGAAATGCAAGCCATTGCCTTTGTTGGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_248410.p1 GENE.R_Transcript_248410~~R_Transcript_248410.p1 ORF type:5prime_partial len:652 (+),score=139.62,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|0.00083,PPR|PF01535.16|7e-07,PPR|PF01535.16|88,PPR|PF01535.16|0.21,PPR|PF01535.16|3.4e-08,PPR|PF01535.16|0.00059,PPR|PF01535.16|0.31,PPR|PF01535.16|7.8e-07,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|0.05,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|2.2,PPR|PF01535.16|0.011,PPR|PF01535.16|3e+03,PPR|PF01535.16|4.2,PPR_2|PF13041.2|0.0033,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|4.6e-09,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|8.4e-11,PPR_2|PF13041.2|0.048,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|1.1e-10,PPR_2|PF13041.2|0.098,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|3.9,PPR_2|PF13041.2|4.9,PPR_2|PF13041.2|2.2e+03,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|0.6,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|1,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|53,PPR_1|PF12854.3|0.0015,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|0.048,PPR_1|PF12854.3|0.62,PPR_1|PF12854.3|4.4e+03,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|32,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|6.5e+02,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.066,PPR_3|PF13812.2|9.6,PPR_3|PF13812.2|0.0049,PPR_3|PF13812.2|68,PPR_3|PF13812.2|1,PPR_3|PF13812.2|65,PPR_3|PF13812.2|13,PPR_3|PF13812.2|16,PPR_3|PF13812.2|21,DYW_deaminase|PF14432.2|1.1e+04,DYW_deaminase|PF14432.2|5.8e-08,TPR_19|PF14559.2|20,TPR_19|PF14559.2|1e+04,TPR_19|PF14559.2|3.2e+02,TPR_19|PF14559.2|6.5e+02,TPR_19|PF14559.2|32,TPR_19|PF14559.2|7.3e+03,TPR_19|PF14559.2|4.4e+03,TPR_19|PF14559.2|48,TPR_19|PF14559.2|31 R_Transcript_248410:2-1957(+)
IHNRLIDMYAKCGYIEDARKMFDKMPQRNTFSYNAVLSALTRWGFVEEAVGVFGSIPERDQCSWNCMVSGFAQHGRFGEAVEYFVGMQKEGILVNQYSFGSVLSACAGLGDLQMGIQVHGLLLKGLCLMMDVYMGSALVDMYAKCGEVTCARRVFEGMAERNRVTWNSLITCYEQNGPVSEAVEIFRKMMDQGVDPDEVTLASVVSACATLMALGEGKQIHALVLKNEKFRDDLILGNALVDMYAKCGRVNEARFIFESMPSRNVITETSLVSGYAKTASVEAANLLFMKMIDRNIVSWNALMAGYTQNGDNEKALSLFCQLKRESVWPTHYTFGNLLNACANLADMHLGMQAHTHVLKHGFCFRAGPEPHIFVGNALIDMYMKCGSVENALLVFQNVVERDLVSWNAMIVGYAQNGYGIEALEMYKQMIVSNEEPDHVTMIGVLCACSHAGLVEEGRHYFRSMTELHGLQPWKDHYTCMVDLLGRAGCFDEAKHLIETMPMQPDNVVWASLLAACKVHRNIEMGKYVAEKLLEIDPTNSGPYVLLSNMYAELGRWKEVTGVRRLMVQRGVVKQPGCSWIEIQSRVHVFLVKDESHRQREEIYFVLKSLTKQMKVSGYVPATADIEIDEEEGEHEAFSDYSVEMQAIAFVG*

Click here to download the sequence:
Link to NCBI Protein BLAST