Transcript Information: R_Transcript_248413.p1


Annotated TAIR IDAT2G13600.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:5671493-5673586 | Forward length=697
E-Value3E-232
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.3503447400138
Replicate 20.16120000319615
Replicate 30.35173493429793
Condition 2: 8 Hour
Replicate 10.18799128558346
Replicate 20
Replicate 30.66195892857457
Condition 3: 24 Hour
Replicate 10.22032444556338
Replicate 20.2116627532685
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_248413.p1 GENE.R_Transcript_248413~~R_Transcript_248413.p1 ORF type:complete len:521 (+),score=98.31,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|0.00045,PPR|PF01535.16|11,PPR|PF01535.16|9.5e-07,PPR|PF01535.16|2.2e+03,PPR|PF01535.16|0.038,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|1.7,PPR|PF01535.16|0.0084,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|3.2,PPR_2|PF13041.2|4.6e-09,PPR_2|PF13041.2|0.046,PPR_2|PF13041.2|0.29,PPR_2|PF13041.2|6.8e-09,PPR_2|PF13041.2|0.075,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|3.7,PPR_2|PF13041.2|1.6e+03,PPR_3|PF13812.2|0.0036,PPR_3|PF13812.2|9.3e+03,PPR_3|PF13812.2|0.05,PPR_3|PF13812.2|33,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|52,PPR_3|PF13812.2|0.78,PPR_3|PF13812.2|49,PPR_3|PF13812.2|10,PPR_3|PF13812.2|12,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|16,PPR_1|PF12854.3|0.038,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|0.00058,PPR_1|PF12854.3|2.2,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|0.48,PPR_1|PF12854.3|3.4e+03,DYW_deaminase|PF14432.2|6.7e-08,Vps39_1|PF10366.5|0.12,Vps39_1|PF10366.5|5.6,Vps39_1|PF10366.5|90,TPR_19|PF14559.2|3.6e+02,TPR_19|PF14559.2|30,TPR_19|PF14559.2|9.2e+02,TPR_19|PF14559.2|3.4e+03,TPR_19|PF14559.2|37,TPR_19|PF14559.2|24 R_Transcript_248413:393-1955(+)
ATGTGTATATGGGGTCTGCTCTTGTTGATATGTATGCTAAGTGTGGGGAAGTGGCCTGTGCTCGACGAGTTTTCGAGGGGATGGCTGAAAGAAATAGTCACTTGGAATAGTCTCATTACTTGTTATAAGCAAAATGGTCCTGCCAGTGAGGCTGTTGAGATACTTAGAAATATGATGGATCAAGGGGTGGACCCGGACGAGGTCACACTGGCGAGTGTGGTTAGTGCCTGCGCAACATTAACGTTGTTAGGAGAAGGTAGGCAGATTCATGCTTTGGTTTTGAAAAATGAGAAGTTCAGGGATGACCTTATTTTAGGTAATGCTTTGGTTGATATGTATGCAAAATGTGGTAGAGTTAATGAAGCTAGATTCATCTTTGAAAGCATGCCATCTAGGAATGTAATAACTGAGACGTCCTTGGTAAGCGGCTCTGCAAAAGCCGCGAGCGTGGAGGCTGCAAACTTATTGTTTATGAAGATGATAGATAGGAACATAGTGTCTTGGAATGCACTTATGGCGGGATACACACAAAATGGAGACAACGAGAAGGCATTGAGCCTATTTCACCAGTTGAAGAGGGAATTGGTCTGGGCCACCCATTATACTTTTGGGAATCTCCTCAATGCCTGTGCAAATCTCGCAGATATGCATCTTGGCATGCAGGCTCATACTCATGTATTGAAACATGGGTTTTGCTTCCGAGCTGGACCAGAACCTCACATCTTTGTGGGGAATGCTTTAATAGACATGTATATGAAATGTGGGTCAGTTGAGAATGCATTACTGGTTTTCCAAAATGTAGTAGAACGAGATCTTGTCTCATGGAATGCAATGATTGTAGGATATGCTCAAAATGGATATGGGATTGAAGCTCTTGAGATGTATAAGCAGATGATAGTATCTAATGAGGAACCTGACCATGTGACGATGATTGGAGTTCTATGTGCTTGTAGCCATGCTGGTCTTGTAGAAGAGGGCAGGCACTATTTCCGCTCAATGACAGAACTTCATGGTTTGCAACCATGGAAGGACCATTACACATGTATGGTTGATTTGCTTGGTCGAGCTGGATGCTTTGATGAAGCAAAACATTTAATTGAAACTATGCCAATGCAGCCTGATAATGTTGTATGGGCTTCTCTGCTTGCTGCTTGCAAAGTTCATCGGAATATTGAAATGGGGAAGTACGTGGCTGAGAAGCTATTGGAAATAGATCCTACTAACTCTGGTCCATATGTTCTGCTCTCAAACATGTACGCGGAGCTTGGAAGATGGAAGGAGGTTACTGGGGTTCGGAGGCTTATGGTGCAAAGGGGAGTTGTTAAGCAGCCAGGCTGTAGCTGGATTGAGATACAGAGCCGTGTGCATGTGTTCTTGGTTAAAGATGAAAGCCACCGCCAGAGAGAGGAGATCTACTTTGTCTTGAAAAGCCTTACCAAACAAATGAAAGTATCTGGCTATGTTCCTGCTACTGCAGACATAGAAATAGATGAGGAAGAGGGTGAGCATGAAGCATTTTCTGATTATTCAGTGGAAATGCAAGCTATTGCCGTTGTTGGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_248413.p1 GENE.R_Transcript_248413~~R_Transcript_248413.p1 ORF type:complete len:521 (+),score=98.31,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|0.00045,PPR|PF01535.16|11,PPR|PF01535.16|9.5e-07,PPR|PF01535.16|2.2e+03,PPR|PF01535.16|0.038,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|1.7,PPR|PF01535.16|0.0084,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|3.2,PPR_2|PF13041.2|4.6e-09,PPR_2|PF13041.2|0.046,PPR_2|PF13041.2|0.29,PPR_2|PF13041.2|6.8e-09,PPR_2|PF13041.2|0.075,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|3.7,PPR_2|PF13041.2|1.6e+03,PPR_3|PF13812.2|0.0036,PPR_3|PF13812.2|9.3e+03,PPR_3|PF13812.2|0.05,PPR_3|PF13812.2|33,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|52,PPR_3|PF13812.2|0.78,PPR_3|PF13812.2|49,PPR_3|PF13812.2|10,PPR_3|PF13812.2|12,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|16,PPR_1|PF12854.3|0.038,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|0.00058,PPR_1|PF12854.3|2.2,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|0.48,PPR_1|PF12854.3|3.4e+03,DYW_deaminase|PF14432.2|6.7e-08,Vps39_1|PF10366.5|0.12,Vps39_1|PF10366.5|5.6,Vps39_1|PF10366.5|90,TPR_19|PF14559.2|3.6e+02,TPR_19|PF14559.2|30,TPR_19|PF14559.2|9.2e+02,TPR_19|PF14559.2|3.4e+03,TPR_19|PF14559.2|37,TPR_19|PF14559.2|24 R_Transcript_248413:393-1955(+)
MCIWGLLLLICMLSVGKWPVLDEFSRGWLKEIVTWNSLITCYKQNGPASEAVEILRNMMDQGVDPDEVTLASVVSACATLTLLGEGRQIHALVLKNEKFRDDLILGNALVDMYAKCGRVNEARFIFESMPSRNVITETSLVSGSAKAASVEAANLLFMKMIDRNIVSWNALMAGYTQNGDNEKALSLFHQLKRELVWATHYTFGNLLNACANLADMHLGMQAHTHVLKHGFCFRAGPEPHIFVGNALIDMYMKCGSVENALLVFQNVVERDLVSWNAMIVGYAQNGYGIEALEMYKQMIVSNEEPDHVTMIGVLCACSHAGLVEEGRHYFRSMTELHGLQPWKDHYTCMVDLLGRAGCFDEAKHLIETMPMQPDNVVWASLLAACKVHRNIEMGKYVAEKLLEIDPTNSGPYVLLSNMYAELGRWKEVTGVRRLMVQRGVVKQPGCSWIEIQSRVHVFLVKDESHRQREEIYFVLKSLTKQMKVSGYVPATADIEIDEEEGEHEAFSDYSVEMQAIAVVG*

Click here to download the sequence:
Link to NCBI Protein BLAST