Transcript Information: R_Transcript_24851.p1


Annotated TAIR IDAT4G34110.1
Annotated Gene Namepoly(A) binding protein 2
Annotated Gene Symbol(s)PAB2, PABP2, ATPAB2
Annotation TypeOrtholog
Chromosome Positionchr4:16336732-16339892 | Forward length=629
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1463.9720713708
Replicate 2234.91655123095
Replicate 3366.43644098518
Condition 2: 8 Hour
Replicate 1329.30055756155
Replicate 2309.1513819663
Replicate 3434.70562817516
Condition 3: 24 Hour
Replicate 1577.27084435643
Replicate 2467.8325787724
Replicate 3547.02215218266


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_24851.p1 GENE.R_Transcript_24851~~R_Transcript_24851.p1 ORF type:3prime_partial len:642 (+),score=184.57,RRM_1|PF00076.18|1.4e-19,RRM_1|PF00076.18|2e-22,RRM_1|PF00076.18|7.8e-25,RRM_1|PF00076.18|1.5e-19,RRM_6|PF14259.2|4.4e-08,RRM_6|PF14259.2|1.1e-12,RRM_6|PF14259.2|8.3e-16,RRM_6|PF14259.2|5.7e-13,RRM_5|PF13893.2|0.00017,RRM_5|PF13893.2|1.5e-09,RRM_5|PF13893.2|3.2e-05,RRM_5|PF13893.2|2.5e-06,PABP|PF00658.14|1.3e+03,PABP|PF00658.14|3.8e-27,RRM_occluded|PF16842.1|12,RRM_occluded|PF16842.1|3.1,RRM_occluded|PF16842.1|0.0052,RRM_occluded|PF16842.1|0.081,RRM_occluded|PF16842.1|5.7e+03,RRM_3|PF08777.7|9.3e+02,RRM_3|PF08777.7|0.051,RRM_3|PF08777.7|1.7,RRM_3|PF08777.7|6.2,Nup35_RRM|PF05172.9|10,Nup35_RRM|PF05172.9|0.17,Nup35_RRM|PF05172.9|2.4e+03,Nup35_RRM|PF05172.9|8.8,Nup35_RRM_2|PF14605.2|4.7,Nup35_RRM_2|PF14605.2|4.8,Nup35_RRM_2|PF14605.2|5.6e+02,Nup35_RRM_2|PF14605.2|27 R_Transcript_24851:338-2260(+)
ATGGCTCAGGTTCAAGTTCAGTCTCAGGCTCCGGTTTCTGGACCTAATGGTGCAGCCCCAAACGCGGCATCTGGGGCTGGCGCTGGTGCGTTTGTGACGACTTCGTTGTACGTCGGTGACCTTGACTTTAACGTCAACGATTCTCAGCTTTACGATCTGTTCAACCAAATTGGTCAAGTTGTTTCGGTCCGGGTGTGCAGGGACTTGACTACCCGCCGGTCACTTGGCTATGGCTATGTCAACTACAACAACCCTCAGGATGCTGCTAGGGCTTTAGATGTGTTGAATTTCACTCCGCTCAATGGAAAGACTATCAGAATCATGTATTCACACCGTGATCCCAGTATCCGTAAAAGTGGGACCGGAAATATTTTCATTAAGAACTTGGACAAGGCCATTGACCACAAAGCTCTGCATGATACATTTTCTTCCTTTGGAAATATTCTTTCGTGCAAGATTGCCACTGACGGTAATGGCCAGTCTAAGGGATATGGTTTTGTCCAGTTTGATAATGAAGAATCTGCTCAAAAAGCCATTGAGAAGCTAAATGGTATGCTGATAAACGATAAACAAGTCTATGTTGGGCATTTTGTTCGCAAGCAGGAAAGGGACACTGTTCTGAACCGAACAAAATTCAACAATGTGTATGTGAAGAATCTTGCAGAATCAACTACAGATGAGGACTTGAAAAAGATCTTTGGTGAATATGGGAGTATCACAAGCGCTGTAGTGATGAGGGATGCAGATGGGAGATCAAAGTGTTTTGGATTTGTCAACTTTGAAAATGCAGATGATGCTGCTAATGCAGTTGAGGCATTGAATGGTAAGAAATTTGATGAGAAAGAGTGGTATGTGGGAAAGGCCCAAAAGAAATATGAAAGAGAGCAGGAACTTAAGGGAAAATTTGAGCAGAGCATGAAGGAAGCTGCTGACAAGTATCAGGGTGCAAATTTGTATATCAAGAACTTGGATGATACCATTGATGATGAAAAGCTCAAAGAGATGTTTTCTGAATTTGGCAAAATTACATCTTGCAAGGTTATGCTTGATCCTAGTGGGGTAAGCAAGGGCTCTGGTTTTGTGGCATTCTCCACCCCTGAAGAGGCTTCTAGAGCTCTTGCAGAGATGAATGGTAAAATAATTGTCAGCAAGCCTTTGTACGTAGCTCTTGCACAGCGAAAAGAAGAAAGGAGGGCTCGCTTGCAGGCACAGTTTTCGCAAATGAGGCCCCTTGCAATGGCCCATTCTGTTGGACCTCGTATGCCAATGTACCCACCAGGTGCTCCAGGCCTTGGACATCAGGTGTTTTATGGACAACCACCACCTATGATTCCTCCACAAGCTGGATTTGGTTATCAGCAGCAGCTTGTCCCAGGAGTGAGGCCTGGAGGAGGACCAATGCCAAACTTCTTTGTGCCATTTATGCAGCAGGGACAAGGTCAGCGTCCAGGAGGGAGACGTGGTGCTGGTCCCATGCAACAAAATCAGCAGCCTGTGCCCATGATGCAGCAGCAGATGCTTCCTAGAGGACGTGTCTATCGCTACCCTCCTGGGCGAAACATGCCAGAGGTTCCAATACCTGGTGCTATGCTTCCTGGGTATGACATGGGTGGTGTGCCTATGCGTGATGCTGGAGTTGCTCAGCCTGTGCCCATCACAGCTTTAGCTAGTGCTTTGGCAAATGCATCCCCTGAGCAGCAGAGGACAATGCTCGGAGAAAGCCTATATCCCCTGGTGGATGCAATTGAGCATGACAATGCTGCTAAAGTGACTGGTATGCTACTGGAGATGGACCAGACTGAGGTTCTGCATCTGCTGGAGTCACCAGATGCCTTAAAGGCCAAAGTTGCAGAGGCGATGGAAGTTCTGAGGAATGTCGCACAGCAGCAGGGGAACAATACAGCTGATCAGCTTGCTTCATTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_24851.p1 GENE.R_Transcript_24851~~R_Transcript_24851.p1 ORF type:3prime_partial len:642 (+),score=184.57,RRM_1|PF00076.18|1.4e-19,RRM_1|PF00076.18|2e-22,RRM_1|PF00076.18|7.8e-25,RRM_1|PF00076.18|1.5e-19,RRM_6|PF14259.2|4.4e-08,RRM_6|PF14259.2|1.1e-12,RRM_6|PF14259.2|8.3e-16,RRM_6|PF14259.2|5.7e-13,RRM_5|PF13893.2|0.00017,RRM_5|PF13893.2|1.5e-09,RRM_5|PF13893.2|3.2e-05,RRM_5|PF13893.2|2.5e-06,PABP|PF00658.14|1.3e+03,PABP|PF00658.14|3.8e-27,RRM_occluded|PF16842.1|12,RRM_occluded|PF16842.1|3.1,RRM_occluded|PF16842.1|0.0052,RRM_occluded|PF16842.1|0.081,RRM_occluded|PF16842.1|5.7e+03,RRM_3|PF08777.7|9.3e+02,RRM_3|PF08777.7|0.051,RRM_3|PF08777.7|1.7,RRM_3|PF08777.7|6.2,Nup35_RRM|PF05172.9|10,Nup35_RRM|PF05172.9|0.17,Nup35_RRM|PF05172.9|2.4e+03,Nup35_RRM|PF05172.9|8.8,Nup35_RRM_2|PF14605.2|4.7,Nup35_RRM_2|PF14605.2|4.8,Nup35_RRM_2|PF14605.2|5.6e+02,Nup35_RRM_2|PF14605.2|27 R_Transcript_24851:338-2260(+)
MAQVQVQSQAPVSGPNGAAPNAASGAGAGAFVTTSLYVGDLDFNVNDSQLYDLFNQIGQVVSVRVCRDLTTRRSLGYGYVNYNNPQDAARALDVLNFTPLNGKTIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGNILSCKIATDGNGQSKGYGFVQFDNEESAQKAIEKLNGMLINDKQVYVGHFVRKQERDTVLNRTKFNNVYVKNLAESTTDEDLKKIFGEYGSITSAVVMRDADGRSKCFGFVNFENADDAANAVEALNGKKFDEKEWYVGKAQKKYEREQELKGKFEQSMKEAADKYQGANLYIKNLDDTIDDEKLKEMFSEFGKITSCKVMLDPSGVSKGSGFVAFSTPEEASRALAEMNGKIIVSKPLYVALAQRKEERRARLQAQFSQMRPLAMAHSVGPRMPMYPPGAPGLGHQVFYGQPPPMIPPQAGFGYQQQLVPGVRPGGGPMPNFFVPFMQQGQGQRPGGRRGAGPMQQNQQPVPMMQQQMLPRGRVYRYPPGRNMPEVPIPGAMLPGYDMGGVPMRDAGVAQPVPITALASALANASPEQQRTMLGESLYPLVDAIEHDNAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQGNNTADQLASL

Click here to download the sequence:
Link to NCBI Protein BLAST