Transcript Information: R_Transcript_248937.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value4E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1321648975553
Replicate 21.9878154240282
Replicate 32.1686852162038
Condition 2: 8 Hour
Replicate 10.28977354967154
Replicate 20.92619037212011
Replicate 30.75184186001603
Condition 3: 24 Hour
Replicate 10.67922506590841
Replicate 20.91353143333752
Replicate 30.3885391364538


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_248937.p1 GENE.R_Transcript_248937~~R_Transcript_248937.p1 ORF type:internal len:169 (-),score=30.45,rve|PF00665.22|4.4e-17,gag_pre-integrs|PF13976.2|2.5e-14 R_Transcript_248937:2-505(-)
ACAGGGTGTGAGAACATGGTTGCTGCTACCACAAGAGATGAGGTCAAGCTTTGGCACAATAGGCTTGGCTACATAAGTGAGAAAGGGATGAAGATTATGGCTTCGAGGGGCAAACTTTCCAATGTGAAATCAGTCGATCTTAAGGTATGTGAGAGTTGTGTGATGGGAAAGCAGAAAAGAATGATTTTCACAAAGAACAGGAAAGAGTTGAGAAAGGAGAAGCTAGAGTTAGTGCACACTGATGTGTACGGTCCATACCACACGAAATCGCTTGGAGGCTCACGGTATATTGTCACCTTTATTGATGACTTTAACAGGAAAGTGTGGGTGTACTTGCTAAAACGAAAATCCGAGGCGTTTGAGTTTTTCAAAGTTTGGAGAGCTGAGGTCGAGAATCAGACAGGAAAGAAGATCAAAATTATGAGGTCTGACAATGGGGGTGAGTATGATGATAGACAGTTCATCAAATATTGTGCAGATAATGGCATCAGATTGACGAGGACA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_248937.p1 GENE.R_Transcript_248937~~R_Transcript_248937.p1 ORF type:internal len:169 (-),score=30.45,rve|PF00665.22|4.4e-17,gag_pre-integrs|PF13976.2|2.5e-14 R_Transcript_248937:2-505(-)
TGCENMVAATTRDEVKLWHNRLGYISEKGMKIMASRGKLSNVKSVDLKVCESCVMGKQKRMIFTKNRKELRKEKLELVHTDVYGPYHTKSLGGSRYIVTFIDDFNRKVWVYLLKRKSEAFEFFKVWRAEVENQTGKKIKIMRSDNGGEYDDRQFIKYCADNGIRLTRT

Click here to download the sequence:
Link to NCBI Protein BLAST