Transcript Information: R_Transcript_249214.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value1E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.41484002169815
Replicate 20.35789148436872
Replicate 30.32537979539989
Condition 2: 8 Hour
Replicate 10.069562116327401
Replicate 20.1905756975101
Replicate 30.051567075626099
Condition 3: 24 Hour
Replicate 10.26088417304209
Replicate 20.62656985484595
Replicate 30.12436195844828


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_249214.p1 GENE.R_Transcript_249214~~R_Transcript_249214.p1 ORF type:3prime_partial len:352 (+),score=25.58,gag_pre-integrs|PF13976.2|1.4e-10,rve|PF00665.22|3,rve|PF00665.22|4.3e+03,rve|PF00665.22|0.013 R_Transcript_249214:203-1255(+)
ATGTTGTATATAAATATCCATCTCAGCTTAATGAAGGCATATACTCGATTATTGGCTCCATCTATTGTCATGGTATCAGAGCAAGGTTTAGATTACCCTAACCCCAAATATTTTTCTGCTTCCATCATCATGAGTGGCAACGAATTACCACCGCCGCCTCCACCACCAACAAAGATTGAACCCAACTCACCCATTGCTACTGGTTCCACCTCTACGTCGACGACGACTCAAGGAAAAGTGCGTGCCCATGCTGCTGCCGTTGATAGCCACCACGGTGGAACAGTACCTACCACTACAGAGGGGGATGCTCTTCCTGGGTTCACTGCTGAACAATGGCAATCACTCATTGCCATGTTTGGCAACACCCAATCCACTTCGACGCGAATGACTGGTGAGTTAGGTACCTGGATTATTGACACCGGCTGCTCGAATCATATCACCGGTGATTTTACCTTGTTGGAAAATGTTCATGAGATGCTTCCATGTCCGGTCGGACTTCCTGACGGTTCGACAGTAGCAGCCACTCAACAAGGCCGCGTGTTTTTTACTGAGAATATTATTTTAAATAATGTTCTTTATGTTCCTAAGTTGAATTGTAGCTTAATTTCAGTTTCACAGTTAAGTGATGATATGAATTGTTTTGTTCAATTCTCTACTAACATATGTGCTATACAAGACCTTCACTCGAGGAAGCTGATTGGAATGGGTGAGAGAAGGAATGGACTTTACTATCTTCGGAACATGTCAATGGTCAAGGCCGTTACAGTTGGTGCGCCGTCGCTGTTGGAGGTTTGGCATCGTCGACTGGGGCATCCCTCCGAGAAAATATTGAAGTTACTTCCCTTTATTCGTAGTTATAAAGATCACACGAATAAAGCCTGTGAAATATGTCCTCGAGCTAAGCAACATAGGCATAGTTTTCCTATTAGTGAGCATAATGCTACTCGTATTTTTGAACTGATTCATTGTGACCTTTGGGGTCCTTATGACACTCCTAGTTCTTGTGGCTCACACTATTTTTTGACTGTGGTTGATGATTTTTCTCGTTGTGTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_249214.p1 GENE.R_Transcript_249214~~R_Transcript_249214.p1 ORF type:3prime_partial len:352 (+),score=25.58,gag_pre-integrs|PF13976.2|1.4e-10,rve|PF00665.22|3,rve|PF00665.22|4.3e+03,rve|PF00665.22|0.013 R_Transcript_249214:203-1255(+)
MLYINIHLSLMKAYTRLLAPSIVMVSEQGLDYPNPKYFSASIIMSGNELPPPPPPPTKIEPNSPIATGSTSTSTTTQGKVRAHAAAVDSHHGGTVPTTTEGDALPGFTAEQWQSLIAMFGNTQSTSTRMTGELGTWIIDTGCSNHITGDFTLLENVHEMLPCPVGLPDGSTVAATQQGRVFFTENIILNNVLYVPKLNCSLISVSQLSDDMNCFVQFSTNICAIQDLHSRKLIGMGERRNGLYYLRNMSMVKAVTVGAPSLLEVWHRRLGHPSEKILKLLPFIRSYKDHTNKACEICPRAKQHRHSFPISEHNATRIFELIHCDLWGPYDTPSSCGSHYFLTVVDDFSRCV

Click here to download the sequence:
Link to NCBI Protein BLAST