Transcript Information: R_Transcript_250602.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeHomolog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value8E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0034350263065
Replicate 20.49467723493896
Replicate 30.11993056333064
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_250602.p1 GENE.R_Transcript_250602~~R_Transcript_250602.p1 ORF type:5prime_partial len:382 (+),score=33.62,Flagellar_rod|PF05149.8|1.8e-105 R_Transcript_250602:2-1147(+)
CGTGACGTTGCCATTTCCGACGGTGAGATGGCGATTGCTGAGGAGCAGTTCTACATCAAGGCTCAGCTGCTTGAGCGCCTTGTGGAGCTGGTGCAGGACAAGTTCCGCATCATTGGCCAGACCGATGACGAGAACAAGATGTTCGCGAAGATCCACGAGGTGCAGAAGAAGGCGTTCCAGGAGACGAGCAGCATGAAGGACGCGAAGCGTCGCCTGAAGCAGCGCTGCGAGGAGGACCTGAAGCACCTGCACGACGCGATCCAGAAGGCTGACCTTGAGGACGCCGAGGCGATGAAGCGCTTCATGGCGCAGAAGGACAAGAGCGAGAAGTTCATGCGCGACAACCTCGAGAAGCAGGACGACAGCTGGCGCAAGATCCAGGAGCTTGAGCGCACGCTGCAGAAGCTGGGCACTGAGCGCTTCGAGGAGGTGAAGCGGCGCATCGAGGAAAACGACCGCGAGGAGAAGCGCAAGGTGGAGTACCAGCAGTTCCTCGACGTTGTTGGCGCGCACAAGAAGCTGCTCGAGCTGACTGTGTACAACTGCGACCTGGCGATCCGCTGCATTGGGATCATCGAGGAGCTCGTCGCTGAGGGCTGCAGCGCGATCAAGGCGCGCTACGACAAGACGAACCAGGAGCTCGCTGACCTGCGCCTGAACGTGCACCAGGAGTACCTCGAGGCGTTCCGCCGCCTGTACAAGACGCTGGGCCAGCTTGTCTACAAGAAGGAGAAGCGCCTGGAGGACATCGACCGCCAGATCCGCACGACGCACATCCAGCTCGAGTTCGCGATCGAGACGTTCGACCCGAACGCGAAGAAGCACAGCGACACGAAGAAGGAGCTGTACAAGCTGCGCGCGCAGGTGGAGGAGGAGATGGAGATGCTGAAGGACAAGATGGCGCAGTCGCTTGAGGCGTTTGGTCCGACGGAGGACGCGCTCACGAATGCTGGCATCGACTTCGTGCACCCCGCCGAGGAGGTCGAGGACAACAACCTGTCGCGCCGCAGCAAGATGGTTGAGTACCGCGCCCACCTTGCGAAGCAGGAGGAGGTGAAGATCGCTGCTGAGCGCGAGGAGCTGAAGCGCGTGAAGGCGATCCAGAGCCAGCAGTACCGCGGCAAGCCGCTGCAGCAGATCGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_250602.p1 GENE.R_Transcript_250602~~R_Transcript_250602.p1 ORF type:5prime_partial len:382 (+),score=33.62,Flagellar_rod|PF05149.8|1.8e-105 R_Transcript_250602:2-1147(+)
RDVAISDGEMAIAEEQFYIKAQLLERLVELVQDKFRIIGQTDDENKMFAKIHEVQKKAFQETSSMKDAKRRLKQRCEEDLKHLHDAIQKADLEDAEAMKRFMAQKDKSEKFMRDNLEKQDDSWRKIQELERTLQKLGTERFEEVKRRIEENDREEKRKVEYQQFLDVVGAHKKLLELTVYNCDLAIRCIGIIEELVAEGCSAIKARYDKTNQELADLRLNVHQEYLEAFRRLYKTLGQLVYKKEKRLEDIDRQIRTTHIQLEFAIETFDPNAKKHSDTKKELYKLRAQVEEEMEMLKDKMAQSLEAFGPTEDALTNAGIDFVHPAEEVEDNNLSRRSKMVEYRAHLAKQEEVKIAAEREELKRVKAIQSQQYRGKPLQQIE*

Click here to download the sequence:
Link to NCBI Protein BLAST