Transcript Information: R_Transcript_250603.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeHomolog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value2E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.3842728622046
Replicate 20.27626711074076
Replicate 30.24112355364371
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_250603.p1 GENE.R_Transcript_250603~~R_Transcript_250603.p1 ORF type:5prime_partial len:380 (+),score=42.77,Flagellar_rod|PF05149.8|9.8e-102 R_Transcript_250603:2-1141(+)
CGTGACGTTGCCATTTCCGACGGTGAGATGGCGATTGCTGAGGAGCAGTTCTACATCAAGGCTCAGCTGCTTGAGCGCCTTGTGGAGCTGGTGCAGGACAAGTTCCGCATCATTGGCCAGACCGATGACGAGAACAAGATGTTCGCGAAGATCCACGAGGTGCAGAAGAAGGCGTTCCAGGAGACGAGCAGCATGAAGGACGCGAAGCGTCGCCTGAAGCAGCGCTGCGAGGAGGACCTGAAGCACCTGCACGACGCGATCCAGAAGGCTGACCTTGAGGACGCCGAGGCGATGAAGCGCTTCATGGCGCAGAAGGACAAGAGCGAGAAGTTCATGCGCGACAACCTCGAGAAGCAGGACGACAGCTGGCGCAAGATCCAGGAGCTTGAGCGCACGCTGCAGAAGCTGGGCACTGAGCGCTTCGAGGAGGTGAAGCGGCGCATCGAGGAAAACGACCGCGAGGAGAAGCGCAAGGTGGAGTACCAGCAGTTCCTCGACGTTGTTGGCGCGCACAAGAAGCTGCTCGAGCTGACTGTGTACAACTGCGATCTCGCGATCCGCTGCACGGGCCTCATCGAGGAGATGGTCGCCGAGGGCTGCGCTGCCGTCAAGGCGCGCCACGACAAGACCGCCCAGGAGCTCGCCGACATGCGCATTGAGGTGCACAAGGAGCACTTGGAGTACTTCCGCATGCTCTACCTGACGCTCGGCTCCCTCATCTACAAGAAGGAGAAGCGCCTCGAAGAGATTGACCGCACCATCCGCACGACGCACATCCAGCTCGAGTTCTGCGTGGAGACCTTCGACCCCAACGCGAAGAAGCACGCCGACACCAAGAAGGACCTGTACAACCTGCGCCAGGGTGTTGAGGAGGAGCTCGCCATGCTCCGCGAGAAGCAGGCCAACGCCCTCGCCGAGTTCAAGGACTCCGAGGAGGCCCTCGACGCCGCGGGTATCGAGTTCCACCACCCCGTGGACGAGAACAACGAGGAGATCCTCACCCGCCGTGGCAAGATGGTGGAGTACAAGGCGCACCTGTCCAAGCAGGAGGAGGTCAAGATCGCCGCCGAGCGTGAGGAGATCCGCCGCGCCAAGACCATCCGCCCGTCGTCCCAGGGCGGTCAGCGCGCCATCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_250603.p1 GENE.R_Transcript_250603~~R_Transcript_250603.p1 ORF type:5prime_partial len:380 (+),score=42.77,Flagellar_rod|PF05149.8|9.8e-102 R_Transcript_250603:2-1141(+)
RDVAISDGEMAIAEEQFYIKAQLLERLVELVQDKFRIIGQTDDENKMFAKIHEVQKKAFQETSSMKDAKRRLKQRCEEDLKHLHDAIQKADLEDAEAMKRFMAQKDKSEKFMRDNLEKQDDSWRKIQELERTLQKLGTERFEEVKRRIEENDREEKRKVEYQQFLDVVGAHKKLLELTVYNCDLAIRCTGLIEEMVAEGCAAVKARHDKTAQELADMRIEVHKEHLEYFRMLYLTLGSLIYKKEKRLEEIDRTIRTTHIQLEFCVETFDPNAKKHADTKKDLYNLRQGVEEELAMLREKQANALAEFKDSEEALDAAGIEFHHPVDENNEEILTRRGKMVEYKAHLSKQEEVKIAAEREEIRRAKTIRPSSQGGQRAIQ*

Click here to download the sequence:
Link to NCBI Protein BLAST