Transcript Information: R_Transcript_251547.p1


Annotated TAIR IDAT5G47460.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19252463-19254193 | Reverse length=576
E-Value1.3E-169
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.59613091765022
Replicate 20.26122924312657
Replicate 30.28499829046535
Condition 2: 8 Hour
Replicate 10.30464528705748
Replicate 20.3825345260545
Replicate 30.50813217910881
Condition 3: 24 Hour
Replicate 10.92830946799426
Replicate 20.85751395375495
Replicate 30.68079952369821


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_251547.p1 GENE.R_Transcript_251547~~R_Transcript_251547.p1 ORF type:5prime_partial len:643 (+),score=88.69,PPR_2|PF13041.2|1.2e+04,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|2.6e-11,PPR_2|PF13041.2|0.3,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|8.2e-06,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|0.95,PPR_2|PF13041.2|3.1e-09,PPR_2|PF13041.2|10,PPR_2|PF13041.2|5.2e+02,PPR_2|PF13041.2|7.4e+03,PPR|PF01535.16|5,PPR|PF01535.16|5.7e-05,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.014,PPR|PF01535.16|0.19,PPR|PF01535.16|5.8e-05,PPR|PF01535.16|0.0012,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|5.6e+02,PPR|PF01535.16|1.5,PPR|PF01535.16|7.4e+03,PPR|PF01535.16|2.6e+02,PPR_1|PF12854.3|0.2,PPR_1|PF12854.3|9.6e-06,PPR_1|PF12854.3|0.57,PPR_1|PF12854.3|0.99,PPR_1|PF12854.3|3.1e-07,PPR_1|PF12854.3|3.4,PPR_1|PF12854.3|7.6e+02,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|3.2,PPR_1|PF12854.3|0.0029,PPR_1|PF12854.3|7.8e+03,PPR_3|PF13812.2|3.5,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|45,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.049,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|2,PPR_3|PF13812.2|3.8e+02,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|76 R_Transcript_251547:2-1930(+)
AGAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGTGACAAGAGGGAAACTCTGTCTCAAAAACAAAACAAAACAAAACAAAAAACAAAAAAACAAAGCGCTGGTCCTCCCACCTAATAAGGCTACAACTACAACTCTACAAGGATACAAGCCAACGTCAAGTTTAATATTTCTGGGCAAGGCAAGAAAAGCGGGAATGCAAAGGGCTCTGCCTCTGCTTAGAGCGCTTGACAATCACCTTCAAACACAAAACCTTCTCCTTCTCTCCCTCTCCTCATCTACCTCTATTTCATTTAACTCATCCAATCCAAGAAAATACTATACTACAGATGAAACAACCAAACCAAATGGGCATGATTTGGTCAATATGATCCGAAACTCTACCATTCAAGGCAATGTTTTTCATGGAAAACAGCTTCATTGCTACGTTTTGCGTTCTGGGTGTGCTGCCAATGTCTTTGTTGGCACGGCTTTGGTCAGTTTTTATGCGAAATTGGTATCGCTTGACGATGCGCACCAACTGTTTGATGACATGCCCCAACCAAATGTTGTCACCTGGAACACTATAATTTCTGGGTATTTACATTCTGGGAAGCTTCACAAGGCGCTATATTTTTTCCTTGATCTTAGTAAGTCGGACCTTCGAGCTGATGCGTACTCGTTTAGTTCTGCATTAGCTGCTTGTGGTCAGTTGTGTTTGTTGCCACTGGGGATGTCAATACACTCGAGAATTGTCATGTGTGGATTGGAATCAAGTGTCGTTGTCGCAAACTGTTTGGTTGATATGTATGGAAAGTGTGGTTCAGTGGATGGTGCCATTAGCATGTTTGATGGGTTTGTTGAGAAGGATTTGATTTCGTGGAACTCGGTTATTGCAGCTAGTGCTAGAAACCAAAGACTTCAACTTGCATTTGCCTATTTTTATCAGATGCCGTGCCCTGATACCGTTTCCTATAATGAACTTATCAGTGGCATAGCACAGTTCGGTGACATGGATGAGGCCATTGAGATCCTGAGGAGCATGAAGGAACCAAATTCATCATCGTGGAATTCAATAATAACAGGTTATGTGGTTCGGGGTAGACCATGGGAGGCTCTGAACTTCTTCACTCAAATCCATGCCAATGGAGGTGATATGGATGAATATACATTCTCGAGTGTGTTGAGTGGAATCACAAGTGTTTCGGCCATAACATGGGGGACACTGCTCCATTGTTACACCATCACATGCGGCTTGGTTGAATCGACAATTATTGGGAGTGCCCTCATTGACATGTACTCAAAATGCGGGCAGGTAAAAGATGCAGAAATGTTGTTTCATTTGCTGGCTAGCAAGAATATAGTTTCTTGGAACGCGATGATCTCTGGCTTTGCTCGTAATGGAGATTCACACAAGGTTATTCAATATTTTGAGGAACTGAAAGGGGTGAAGGGATTGCAGGCAGATGATATCACCTTTGTTAATCTTTTGGCAGCATGTTCACATAGCAAAATGCCATTAGAGAAGGCTTATGAGTATTTTACGTCCATGATCAATGATTATGGGATCCAACCAAGACCTGAGCACTTGTCTTCTATGATCAGGCTCATGGGACATCATGGTGATGTGCGCAGGGCAGAGATGATGATTCATGAATTAGGCTTTGGGTCATGCAGTTCAGTTTGGAGGGCTTTGCTTGGCGCCTGTGAAGCTTATGGGGACTTGGACGTTGCGAGGTTCGCAGCTGCCAAGTTGATGGAATTAGTTGGTAATGATGAGTTTGGATATGTGGTTTTGTCAAATATGAACAAGGGTCATGGGAATTGGGTAGATGCAACTGCAGCCTGGAAACTGATGAGAGAGCAAGGGGTAGTCAAAGAAGCTGGCTTTAGTCGGATTGAAACGGGAAAGTCAACTTATGTAAAAACAGGATTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_251547.p1 GENE.R_Transcript_251547~~R_Transcript_251547.p1 ORF type:5prime_partial len:643 (+),score=88.69,PPR_2|PF13041.2|1.2e+04,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|2.6e-11,PPR_2|PF13041.2|0.3,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|8.2e-06,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|0.95,PPR_2|PF13041.2|3.1e-09,PPR_2|PF13041.2|10,PPR_2|PF13041.2|5.2e+02,PPR_2|PF13041.2|7.4e+03,PPR|PF01535.16|5,PPR|PF01535.16|5.7e-05,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.014,PPR|PF01535.16|0.19,PPR|PF01535.16|5.8e-05,PPR|PF01535.16|0.0012,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|5.6e+02,PPR|PF01535.16|1.5,PPR|PF01535.16|7.4e+03,PPR|PF01535.16|2.6e+02,PPR_1|PF12854.3|0.2,PPR_1|PF12854.3|9.6e-06,PPR_1|PF12854.3|0.57,PPR_1|PF12854.3|0.99,PPR_1|PF12854.3|3.1e-07,PPR_1|PF12854.3|3.4,PPR_1|PF12854.3|7.6e+02,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|3.2,PPR_1|PF12854.3|0.0029,PPR_1|PF12854.3|7.8e+03,PPR_3|PF13812.2|3.5,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|45,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.049,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|2,PPR_3|PF13812.2|3.8e+02,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|76 R_Transcript_251547:2-1930(+)
RGCSEPRLCHCTPAWVTRGKLCLKNKTKQNKKQKNKALVLPPNKATTTTLQGYKPTSSLIFLGKARKAGMQRALPLLRALDNHLQTQNLLLLSLSSSTSISFNSSNPRKYYTTDETTKPNGHDLVNMIRNSTIQGNVFHGKQLHCYVLRSGCAANVFVGTALVSFYAKLVSLDDAHQLFDDMPQPNVVTWNTIISGYLHSGKLHKALYFFLDLSKSDLRADAYSFSSALAACGQLCLLPLGMSIHSRIVMCGLESSVVVANCLVDMYGKCGSVDGAISMFDGFVEKDLISWNSVIAASARNQRLQLAFAYFYQMPCPDTVSYNELISGIAQFGDMDEAIEILRSMKEPNSSSWNSIITGYVVRGRPWEALNFFTQIHANGGDMDEYTFSSVLSGITSVSAITWGTLLHCYTITCGLVESTIIGSALIDMYSKCGQVKDAEMLFHLLASKNIVSWNAMISGFARNGDSHKVIQYFEELKGVKGLQADDITFVNLLAACSHSKMPLEKAYEYFTSMINDYGIQPRPEHLSSMIRLMGHHGDVRRAEMMIHELGFGSCSSVWRALLGACEAYGDLDVARFAAAKLMELVGNDEFGYVVLSNMNKGHGNWVDATAAWKLMREQGVVKEAGFSRIETGKSTYVKTGF*

Click here to download the sequence:
Link to NCBI Protein BLAST