Transcript Information: R_Transcript_25226.p1


Annotated TAIR IDAT3G61520.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:22768974-22771274 | Reverse length=766
E-Value6.4E-199
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0800736251724
Replicate 21.8937839591171
Replicate 33.2338923665156
Condition 2: 8 Hour
Replicate 13.3928126593569
Replicate 24.9690848535968
Replicate 35.6234401529826
Condition 3: 24 Hour
Replicate 15.0117043229106
Replicate 24.439882181894
Replicate 36.0656122792447


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_25226.p1 GENE.R_Transcript_25226~~R_Transcript_25226.p1 ORF type:complete len:765 (+),score=143.05,PPR_2|PF13041.2|98,PPR_2|PF13041.2|0.0084,PPR_2|PF13041.2|5.8,PPR_2|PF13041.2|3.2e-10,PPR_2|PF13041.2|1.2e-07,PPR_2|PF13041.2|1.1e-14,PPR_2|PF13041.2|8.9e-17,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|4e-09,PPR_2|PF13041.2|0.00054,PPR_2|PF13041.2|8.9e-15,PPR_2|PF13041.2|6.2e-16,PPR_2|PF13041.2|2e-08,PPR_2|PF13041.2|3.6e-14,PPR_2|PF13041.2|0.00015,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|0.93,PPR_1|PF12854.3|3.5e+03,PPR_1|PF12854.3|3.8e-10,PPR_1|PF12854.3|5.3e-10,PPR_1|PF12854.3|1.4e-11,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|3.3e-11,PPR_1|PF12854.3|6.9e-07,PPR_1|PF12854.3|6.3e-09,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|8.6e-11,PPR_1|PF12854.3|0.0031,PPR_1|PF12854.3|8.9e+03,PPR|PF01535.16|0.45,PPR|PF01535.16|4.1,PPR|PF01535.16|0.0013,PPR|PF01535.16|7.7e-05,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|4.2e-10,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|2.8e-07,PPR|PF01535.16|5.2e-07,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|2.5,PPR_3|PF13812.2|17,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.039,PPR_3|PF13812.2|0.0051,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|1.2e-07,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.0051,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|3.6e-07,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|4.2e+02,ATP13|PF12921.3|9e+03,ATP13|PF12921.3|78,ATP13|PF12921.3|65,ATP13|PF12921.3|11,ATP13|PF12921.3|20,ATP13|PF12921.3|36,ATP13|PF12921.3|9.7,ATP13|PF12921.3|16,TPR_19|PF14559.2|1.7e+02,TPR_19|PF14559.2|5e+02,TPR_19|PF14559.2|5.4e+03,TPR_19|PF14559.2|2.8,TPR_19|PF14559.2|1.4,TPR_19|PF14559.2|3.6e+03,TPR_19|PF14559.2|2.5e+02,RPN7|PF10602.5|46,RPN7|PF10602.5|2.7e+02,RPN7|PF10602.5|7.2,RPN7|PF10602.5|0.1 R_Transcript_25226:888-3182(+)
ATGAGCATAAGATCAACAGCACCTAAATGCTCAAAATTGCTACGACTAGTACTCCGATCCCAGAACCCTAAACCACGGTCTCGTTGCCTTCATTTATCCACTGAAAAGCCCTCTCATCTTCAACCACAAACAACAGACCCATCATCATTCTCTTCCCCTATCATAAGCCAAATTGCCAACATCCTCAAATCCAATGACAATGAGACTTGGAAAGCCAATGATCATCTTACCCAACTCTTGTCAGGATCTCAATCTCTCTCCTCTGATGAATACCTGCAAATTACACTATGTTTGGGCGACTCTTCCATTGCTCTCAATTTTGTCGAATACCTTAGATCCAATTCCTTGTTGCCTGATGATAATTCTTTGTCTTGTGTGTTCCAAGCCGTTTTTGAGCTTGCTAGTAATGAACCCAATAGGCAGGAGAAGTTATTGGAGCTCCTTAACACTTCTAAGGAGCTTAATGTACCTTTGAATGAGGGGTCTTCTACCTTTCTTATAAAAAGATTTGGGTTTGACAAAATGCTGGAAAATTCAATATTGGCGTATGAAACTTTGGACGCTCAGAAGAGGAAATCTCATGTTAGGAATGTCTTGATTGAGGAGTTGCTGAAAGGCGGGCGCGTCGACTACGCACTCCAGGTGCTCAACGAAATGCTCCAGCCAAATGCTGAGTTCTTGCCGGATGAAAAGACTGGGGAGATTGTCTTTTCTGAGTTGTTGAAGAGTGAAAAGTACGAGAGGTGGATCCGTGAGAAGGAGATTTTGGAGCTTGTGTCTAAGTTTGGCAATCAGGGGGTGTTTCCTGATACATTAAGGCTTACACAGTGGATTACTAAGTTTTGTAGGAGAGGAAAGAGTGATAAAGCTTGGGATCTTCTTCATGTTGTGATGGACTTGAATGGGCCTATTGAGGCTGCTCCTTGTAATGCTTTGTTGACAGGGTTGGGGAAAAACAATCAATACAAGAAGATGAATCTTCTAGTAAAAGAGATGAAAGAGAAAGGAGTAGCTCCAAATGTGGTGACTTTTGGAATTAGTATTAATCATCTTTGTAAGCGTGGGAGAATAGAGGAAGCTCTGGATTTGTTTGAAAAAATGAGAGAAGGCAAGATTGGAGTTGTTGTTGAGCCCGATGTAGTTATCTATAATACTATTATTGATGGCCTATGTAAAGTTGGACGTATAGAACATGGATTAGCTTTCATGCGGAAGATGGTACAAGAGAGTAAGATTTCTCCTAGCACTGCTACTTATAACTGTCTGATTGATGGGTATTGCAAATCGGGTGAGCTTGATAGGTCCCTTGAATTGTTTCATGAGATGAGCAAGGAAGGGGTTGAGCCAAATATTATTACAGTAAACTGTTTGGTGGATGGCATGTGCAGACATGGAAAAGCTGGTAGTGCACTTGAGTTTTACCGGGAAATGAAACAAAAAGGGATGGAGGGAAATGCGGTAACTTACACAGCATTAATCAGTGGCTTTTGTAGTGTGAACAATTTGAATAAAGCGCTGGAGTTGTTCAATGAGATGCAAGAGAAGTGCACATTAGATGCCATTGTTTACTACACCTTGATTTCTGGTTTGTCCCAAGCTGGACGTATGGATGATGCTGAATTTGTTTTATCAGAGATGAAACATGCTGGATTTCGAGCTGACATTGGTTGCTACAATATAATGATCAATGGTTTTTGCAAGAAGAGTAGGATGGATAAAGTTCATGAGTTGTTGGAGGAAATGGAAGATGCTGAAATAGAGCCTGATAGCTTCACTTATAATACTTTAATTTCACATTTTAGCAAATTTGGGGATCTGAAAATGGCTCTTAAACTTCTTAGGCGAATGGTCAAGGACAATGTTGCTCCTACAGTTGTCACCTATGGAGCACTAATTCGTGCATGCTGTTCAGTGGGAGAACTAGATGAAGCCATGAAGATTTTCCATGAAATGAAGTCCTCCATAATGGTTCCACCCAATACTGTGATATACAATACCTTGATAAGCTCTCTTTGTCAAAAACGGAGGGTGAAGGCTGCTCTCGTTCTATTAGATGACATGAAATTAAAGGGAGTGAACCCTGATACGAACACCTTTAATCCTATATTTAAGAGCCTGCAGGAGGAAAACAGGATTGAAAAAGCCTATGAGCTCATGGACAGAATGGTTGAAGAGGCTTGTAATCCTGACTACGTAACCCTAGAAGTACTTACGGAATGGCTCATGGCTGTTGGTCAAGCTGATAAACTAAGAAAATTTGTCCAAGGGTACAAGGTCTCTCTTTCAACAGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_25226.p1 GENE.R_Transcript_25226~~R_Transcript_25226.p1 ORF type:complete len:765 (+),score=143.05,PPR_2|PF13041.2|98,PPR_2|PF13041.2|0.0084,PPR_2|PF13041.2|5.8,PPR_2|PF13041.2|3.2e-10,PPR_2|PF13041.2|1.2e-07,PPR_2|PF13041.2|1.1e-14,PPR_2|PF13041.2|8.9e-17,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|4e-09,PPR_2|PF13041.2|0.00054,PPR_2|PF13041.2|8.9e-15,PPR_2|PF13041.2|6.2e-16,PPR_2|PF13041.2|2e-08,PPR_2|PF13041.2|3.6e-14,PPR_2|PF13041.2|0.00015,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|0.93,PPR_1|PF12854.3|3.5e+03,PPR_1|PF12854.3|3.8e-10,PPR_1|PF12854.3|5.3e-10,PPR_1|PF12854.3|1.4e-11,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|3.3e-11,PPR_1|PF12854.3|6.9e-07,PPR_1|PF12854.3|6.3e-09,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|8.6e-11,PPR_1|PF12854.3|0.0031,PPR_1|PF12854.3|8.9e+03,PPR|PF01535.16|0.45,PPR|PF01535.16|4.1,PPR|PF01535.16|0.0013,PPR|PF01535.16|7.7e-05,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|4.2e-10,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|2.8e-07,PPR|PF01535.16|5.2e-07,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|2.5,PPR_3|PF13812.2|17,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.039,PPR_3|PF13812.2|0.0051,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|1.2e-07,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.0051,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|3.6e-07,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|4.2e+02,ATP13|PF12921.3|9e+03,ATP13|PF12921.3|78,ATP13|PF12921.3|65,ATP13|PF12921.3|11,ATP13|PF12921.3|20,ATP13|PF12921.3|36,ATP13|PF12921.3|9.7,ATP13|PF12921.3|16,TPR_19|PF14559.2|1.7e+02,TPR_19|PF14559.2|5e+02,TPR_19|PF14559.2|5.4e+03,TPR_19|PF14559.2|2.8,TPR_19|PF14559.2|1.4,TPR_19|PF14559.2|3.6e+03,TPR_19|PF14559.2|2.5e+02,RPN7|PF10602.5|46,RPN7|PF10602.5|2.7e+02,RPN7|PF10602.5|7.2,RPN7|PF10602.5|0.1 R_Transcript_25226:888-3182(+)
MSIRSTAPKCSKLLRLVLRSQNPKPRSRCLHLSTEKPSHLQPQTTDPSSFSSPIISQIANILKSNDNETWKANDHLTQLLSGSQSLSSDEYLQITLCLGDSSIALNFVEYLRSNSLLPDDNSLSCVFQAVFELASNEPNRQEKLLELLNTSKELNVPLNEGSSTFLIKRFGFDKMLENSILAYETLDAQKRKSHVRNVLIEELLKGGRVDYALQVLNEMLQPNAEFLPDEKTGEIVFSELLKSEKYERWIREKEILELVSKFGNQGVFPDTLRLTQWITKFCRRGKSDKAWDLLHVVMDLNGPIEAAPCNALLTGLGKNNQYKKMNLLVKEMKEKGVAPNVVTFGISINHLCKRGRIEEALDLFEKMREGKIGVVVEPDVVIYNTIIDGLCKVGRIEHGLAFMRKMVQESKISPSTATYNCLIDGYCKSGELDRSLELFHEMSKEGVEPNIITVNCLVDGMCRHGKAGSALEFYREMKQKGMEGNAVTYTALISGFCSVNNLNKALELFNEMQEKCTLDAIVYYTLISGLSQAGRMDDAEFVLSEMKHAGFRADIGCYNIMINGFCKKSRMDKVHELLEEMEDAEIEPDSFTYNTLISHFSKFGDLKMALKLLRRMVKDNVAPTVVTYGALIRACCSVGELDEAMKIFHEMKSSIMVPPNTVIYNTLISSLCQKRRVKAALVLLDDMKLKGVNPDTNTFNPIFKSLQEENRIEKAYELMDRMVEEACNPDYVTLEVLTEWLMAVGQADKLRKFVQGYKVSLSTA*

Click here to download the sequence:
Link to NCBI Protein BLAST