Transcript Information: R_Transcript_252738.p1


Annotated TAIR IDAT3G22470.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7966066-7967925 | Reverse length=619
E-Value1E-110
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0569007125581
Replicate 20.19714836071641
Replicate 30.50186905531476
Condition 2: 8 Hour
Replicate 10.15327614990451
Replicate 20.20996133184212
Replicate 30.65334435722833
Condition 3: 24 Hour
Replicate 10.53891566262216
Replicate 20.62127489832612
Replicate 30.37678364875723


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_252738.p1 GENE.R_Transcript_252738~~R_Transcript_252738.p1 ORF type:5prime_partial len:639 (+),score=120.10,PPR_2|PF13041.2|4e-08,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|8.5e-14,PPR_2|PF13041.2|3.3e-16,PPR_2|PF13041.2|4.9e-09,PPR_2|PF13041.2|1.7e-17,PPR_2|PF13041.2|9e-18,PPR_2|PF13041.2|8.9e-10,PPR_2|PF13041.2|5.8e-16,PPR_2|PF13041.2|3.2e-16,PPR_2|PF13041.2|0.0095,PPR_2|PF13041.2|3.2e-09,PPR_2|PF13041.2|7.8e-14,PPR_2|PF13041.2|8.9e-08,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|0.049,PPR_1|PF12854.3|2.6e-10,PPR_1|PF12854.3|2.7e-05,PPR_1|PF12854.3|1.6e-13,PPR_1|PF12854.3|3.2e-10,PPR_1|PF12854.3|4.9e-10,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|2.2e-11,PPR_1|PF12854.3|3.5e-07,PPR_1|PF12854.3|9.5e-10,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|9.4e-07,PPR_1|PF12854.3|1e-08,PPR_1|PF12854.3|0.002,PPR|PF01535.16|0.85,PPR|PF01535.16|0.066,PPR|PF01535.16|0.00021,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|4.2e-09,PPR|PF01535.16|2.5e-07,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|8.3e-08,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|2.9e-07,PPR|PF01535.16|3.9e-05,PPR|PF01535.16|9.8e-07,PPR|PF01535.16|0.00044,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|6.2,PPR_3|PF13812.2|62,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|8.3e-05,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|0.00044,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.008,PPR_3|PF13812.2|0.067,PPR_3|PF13812.2|0.072,PPR_3|PF13812.2|5.2,PPR_3|PF13812.2|0.13,TPR_14|PF13428.2|1.3e+04,TPR_14|PF13428.2|9.3e+03,TPR_14|PF13428.2|2.8e+02,TPR_14|PF13428.2|8.2e+02,TPR_14|PF13428.2|3.5e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|33,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|3.4,TPR_16|PF13432.2|1.6e+04,TPR_16|PF13432.2|1.1e+04,TPR_16|PF13432.2|1.2e+04,TPR_16|PF13432.2|3.2e+02,TPR_16|PF13432.2|67,TPR_16|PF13432.2|2.8e+02,TPR_16|PF13432.2|3.4e+03,TPR_16|PF13432.2|2.1,TPR_16|PF13432.2|3.5e+02,TPR_7|PF13176.2|4e+02,TPR_7|PF13176.2|3.6,TPR_7|PF13176.2|3.8e+02,TPR_7|PF13176.2|4.8e+02,TPR_7|PF13176.2|25,ATP13|PF12921.3|0.51,ATP13|PF12921.3|30,ATP13|PF12921.3|3.3e+03,ATP13|PF12921.3|6.1e+02,ATP13|PF12921.3|32,ATP13|PF12921.3|8.5e+03 R_Transcript_252738:1-1917(+)
AAAACCTATCCTCATCTGCAAATGCAAGGGCTAAAGGCTGGAATTCCATCTTCAACATCAAAAACTTCTCTTATTCCTCTGTCATCTTTATTTAGTAATCCATCATCATCATCCCATGTTTTACCTTCTGCAAATCCCAGACCTGCAAAAATTGAACTACACATTAGAGCCCAGTCCAAGTTAGGCAAACTCACCCTACATGATGCAATCAAATATTTTGATCATTTGATCTATTTACAACCCTTTCCTACAATTGACACCTTTAATCATCTTCTTGGGTCACTTGCCAAAATGGGTCACTACCAAGATGTCTTCTTACTGTACAAAAAGCTGAATTATGTAGGGCTTAGGGCTGATCTTTATACATTCAACATCTTGATCAACTGTTGTTGTCACTTACGTTGCATGGGGTGTGGGTTTGGGGTGCTGGGGCAGGTATTAAAGTGGGGATTTGTTCCTGATTCAGTTACTGTTAAGACTATCGTGAAAGGACTGTGTCAAGAAGGGAGAGTCTTTGATGCACTCCAAGTGTTTGATGATATGTCTGAGTGGGGTGCTCAGAAGGAGGCTGTTGCTTATGGGATGCTTATTAGTGGACTTTGTAAACATGGAGAGATGGGCCTTGCTCTTGAGCTGCATAGGAAGATGGTCAAGAGTGGTAATTGTAAGCCCAATGTGGTTACCTATAGTGCTATCATTGATTCCTTTTGTAAGAGTGGTTTGATGAATGAGGCTCTAGGTGTGTTTAAGGAGATGCTTGGTGCAGGCATAACCCCGGATGTTGTTGTTTGCAGCTCATTGATCAAGGGTTTGTGTGGTTTTGGGTTGCTGGAAGAAGCTAAGAAGCTTTTCGATGAGATGATCACTCGAGGCATTTCAGCTGATGTAGTTGCATATAATTGTTTGCTCCATGGATTCTGTCAAGGAGGCAGATGGAAACAGGCAGTGAGGATTTTTAAGCAAATGATGAGGCGAGGGACCTTGCCTGACTTGGTAACATTCACGATGATGATAGACTATCTATGCAAATTGGGGAAGGTAGGAGAAGCAAGTCACTTATTTAAACTGATGATCGAACAGGGTTTGGAGCCAAATGTTTATACCTATAATTCACTCCTTAACGGCCTATGTTTACTTGGCGAGTTGGATGATGCTGCAAAGCTTTTCGAGTTGATAAGAGATAAGGGCATTAAGCTTGATGTTACTAGCTACAATATAATGATGAATGGATACTTCAAGAATCATAGGGCAGATGAAGCTGTCTGGCTTTTTCAGGAACTGAAAGATAAGGGATTCAGGCCCTCATCAGCTACCTACAACACACTCATTGGAGGACTTTGCAAGGCAAGAAGATTAGGAAATGCCAAAAGAGCATTTGAAGAGATGCAGTCTCTTGGGACCCCTCCTGACTTGCATACATATGGTATTATGTTGAATGGCCTCTGCAAAAATGGGCTAATGGAGGAAGCTTTGGATTTATTTTCATGCTTGAGAAATTCTGATCTCAAATACGGGGTTGAAGTTTTCAACATAATCATTGGTGGGTTGTGCAGAGCTGGTAAATTGGACGAAGCTAGGGAACAACTTAATGAAATAGTAAAAGCGGGATTAGTACCTGATATTTCCACTTACAATACGGTCATTAATTGGTACTGTAAGAAAGAGATGCATTCCCAAGCAATCAAGTTTCTTCAGAAAATGGAAGAAGGGGGTTGCCCCCAGGACTCCATTTCCTACAATATCATCATTCAGGAGCTTCTTCAAGCAAATGAGACTGATAAGGCTGTGGACTTACTCAAGAAAATGCTCGAGAAGAACCATCAGCCTAATGATACATTTACTTCCATTTTGTTGGACCGAGTTCTGGTTGATGACAGATTGCGTGCTAGCCTAGAGTTACTTCCTGACATCATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_252738.p1 GENE.R_Transcript_252738~~R_Transcript_252738.p1 ORF type:5prime_partial len:639 (+),score=120.10,PPR_2|PF13041.2|4e-08,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|8.5e-14,PPR_2|PF13041.2|3.3e-16,PPR_2|PF13041.2|4.9e-09,PPR_2|PF13041.2|1.7e-17,PPR_2|PF13041.2|9e-18,PPR_2|PF13041.2|8.9e-10,PPR_2|PF13041.2|5.8e-16,PPR_2|PF13041.2|3.2e-16,PPR_2|PF13041.2|0.0095,PPR_2|PF13041.2|3.2e-09,PPR_2|PF13041.2|7.8e-14,PPR_2|PF13041.2|8.9e-08,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|0.049,PPR_1|PF12854.3|2.6e-10,PPR_1|PF12854.3|2.7e-05,PPR_1|PF12854.3|1.6e-13,PPR_1|PF12854.3|3.2e-10,PPR_1|PF12854.3|4.9e-10,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|2.2e-11,PPR_1|PF12854.3|3.5e-07,PPR_1|PF12854.3|9.5e-10,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|9.4e-07,PPR_1|PF12854.3|1e-08,PPR_1|PF12854.3|0.002,PPR|PF01535.16|0.85,PPR|PF01535.16|0.066,PPR|PF01535.16|0.00021,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|4.2e-09,PPR|PF01535.16|2.5e-07,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|8.3e-08,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|2.9e-07,PPR|PF01535.16|3.9e-05,PPR|PF01535.16|9.8e-07,PPR|PF01535.16|0.00044,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|6.2,PPR_3|PF13812.2|62,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|8.3e-05,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|0.00044,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.008,PPR_3|PF13812.2|0.067,PPR_3|PF13812.2|0.072,PPR_3|PF13812.2|5.2,PPR_3|PF13812.2|0.13,TPR_14|PF13428.2|1.3e+04,TPR_14|PF13428.2|9.3e+03,TPR_14|PF13428.2|2.8e+02,TPR_14|PF13428.2|8.2e+02,TPR_14|PF13428.2|3.5e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|33,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|3.4,TPR_16|PF13432.2|1.6e+04,TPR_16|PF13432.2|1.1e+04,TPR_16|PF13432.2|1.2e+04,TPR_16|PF13432.2|3.2e+02,TPR_16|PF13432.2|67,TPR_16|PF13432.2|2.8e+02,TPR_16|PF13432.2|3.4e+03,TPR_16|PF13432.2|2.1,TPR_16|PF13432.2|3.5e+02,TPR_7|PF13176.2|4e+02,TPR_7|PF13176.2|3.6,TPR_7|PF13176.2|3.8e+02,TPR_7|PF13176.2|4.8e+02,TPR_7|PF13176.2|25,ATP13|PF12921.3|0.51,ATP13|PF12921.3|30,ATP13|PF12921.3|3.3e+03,ATP13|PF12921.3|6.1e+02,ATP13|PF12921.3|32,ATP13|PF12921.3|8.5e+03 R_Transcript_252738:1-1917(+)
KTYPHLQMQGLKAGIPSSTSKTSLIPLSSLFSNPSSSSHVLPSANPRPAKIELHIRAQSKLGKLTLHDAIKYFDHLIYLQPFPTIDTFNHLLGSLAKMGHYQDVFLLYKKLNYVGLRADLYTFNILINCCCHLRCMGCGFGVLGQVLKWGFVPDSVTVKTIVKGLCQEGRVFDALQVFDDMSEWGAQKEAVAYGMLISGLCKHGEMGLALELHRKMVKSGNCKPNVVTYSAIIDSFCKSGLMNEALGVFKEMLGAGITPDVVVCSSLIKGLCGFGLLEEAKKLFDEMITRGISADVVAYNCLLHGFCQGGRWKQAVRIFKQMMRRGTLPDLVTFTMMIDYLCKLGKVGEASHLFKLMIEQGLEPNVYTYNSLLNGLCLLGELDDAAKLFELIRDKGIKLDVTSYNIMMNGYFKNHRADEAVWLFQELKDKGFRPSSATYNTLIGGLCKARRLGNAKRAFEEMQSLGTPPDLHTYGIMLNGLCKNGLMEEALDLFSCLRNSDLKYGVEVFNIIIGGLCRAGKLDEAREQLNEIVKAGLVPDISTYNTVINWYCKKEMHSQAIKFLQKMEEGGCPQDSISYNIIIQELLQANETDKAVDLLKKMLEKNHQPNDTFTSILLDRVLVDDRLRASLELLPDII*

Click here to download the sequence:
Link to NCBI Protein BLAST