Transcript Information: R_Transcript_252739.p1


Annotated TAIR IDAT3G22470.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7966066-7967925 | Reverse length=619
E-Value6E-95
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.033540416000476
Replicate 30
Condition 2: 8 Hour
Replicate 10.078229600470432
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.10569612886858
Replicate 30.31467946035475


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_252739.p1 GENE.R_Transcript_252739~~R_Transcript_252739.p1 ORF type:5prime_partial len:626 (+),score=114.33,PPR_2|PF13041.2|3.6e-07,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|8.3e-14,PPR_2|PF13041.2|3.2e-16,PPR_2|PF13041.2|6.8e-14,PPR_2|PF13041.2|5.3e-08,PPR_2|PF13041.2|1.6e-17,PPR_2|PF13041.2|8.8e-18,PPR_2|PF13041.2|9e-10,PPR_2|PF13041.2|5.7e-16,PPR_2|PF13041.2|3.2e-16,PPR_2|PF13041.2|0.0093,PPR_2|PF13041.2|2.4e-12,PPR_2|PF13041.2|2.4e-06,PPR_1|PF12854.3|73,PPR_1|PF12854.3|0.98,PPR_1|PF12854.3|2.5e-10,PPR_1|PF12854.3|2.6e-05,PPR_1|PF12854.3|1.5e-13,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|2.2e-09,PPR_1|PF12854.3|4.8e-10,PPR_1|PF12854.3|1.2e-07,PPR_1|PF12854.3|2.2e-11,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|9.2e-10,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|9.2e-07,PPR_1|PF12854.3|4.9e-07,PPR|PF01535.16|1.9,PPR|PF01535.16|0.57,PPR|PF01535.16|0.00021,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|4.1e-09,PPR|PF01535.16|2.4e-07,PPR|PF01535.16|2.4e-07,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|4.4e-06,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|8.1e-08,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|2.8e-07,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|0.001,PPR_3|PF13812.2|4.7e+03,PPR_3|PF13812.2|4.8,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|0.69,PPR_3|PF13812.2|8.1e-05,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.00042,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|0.0072,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.0078,PPR_3|PF13812.2|0.066,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|2.3e+03,DUF3368|PF11848.4|5.1e+03,DUF3368|PF11848.4|18,DUF3368|PF11848.4|18,DUF3368|PF11848.4|2.4,DUF3368|PF11848.4|1.3e+02 R_Transcript_252739:1-1878(+)
AAAACCTATCCTCATCTGCAAATGCAAGGGCTAAAGGCTGGAATTCCATCTTCAACATCAAAAACTTCTCTTATTCCTCTGTCATCTTTATTTAGTAATCCATCATCATCATCCCATGTTTTACCTTCTGCAAATCCCAGACCTGCAAAAATTGAACTACACATTAGAGCCCAGTCCAAGTTAGGCAAACTCACCCTACATGATGCAATCAAATATTTTGATCATTTGATCTATTTACAACCCTTTCCTACAATTGACACCTTTAATCATCTTCTTGGGTCACTTGCCAAAATGGGTCACCACCAAGATGTCTTCTTACTGTATAAAAAGCTTAATTTTGTAGGGCTTAGGGCTGACCTTTATACACTCAACATTTTGATCAACTGTTGTTGTCATTTACGTTGCATGGGTTGCGGGTTTGGGGTTTTGGGGCAGGTATTAAAGTGGGGATTTGTTCCTGATTCAGTTACTGTTAAGACTATCGTGAAAGGACTGTGTCAAGAAGGGAGAGTCTTTGATGCACTCCAAGTGTTTGATGATATGTCTGAGTGGGGTGCTCAGAAGGAGGCTGTTGCTTATGGGATGCTTATTAGTGGACTTTGTAAACATGGAGAGATGGGCCTTGCTCTTGAGCTGCATAGGAAGATGGTCAAGAGTGGTAATTGTAAGCCCAATGTGGTTACCTATAGTGCTATCATTGATTCCTTTTGTAAGAGTGGTTTGATGAATGAGGCTCTAGGTGTGTTTAAGGAGATGCTTGGTGCAGGCATAACCCCGGATGTTGTTGTTTGCAGCTCATTGATCAAGGGTTTGTGTGGTTTTGGGTTGCTGGAAGAAGCTAAGAAGCTTTTCGATGAGATGATCACTCGAGGCATTTCAGCTGATGTTGTTGTTTGCAGCTCATTGATCAAGGGTTTGTGTGGTTTTGGGTTGCTGGAAGAAGCTAAGAAGCTTTTCGATGAGATGATCACTCGAGGCATTTCAGCTGATGTAGTTGCATATAATTGTTTGCTCCATGGATTCTGTCAAGGAGGCAGATGGAAACAGGCAGTGAGGATTTTTAAGCAAATGATGAGGCGAGGGACCTTGCCTGACTTGGTAACATTCACGATGATGATAGACTATCTATGCAAATTGGGGAAGGTAGGAGAAGCAAGTCACTTATTTAAACTGATGATCGAACAGGGTTTGGAGCCAAATGTTTATACCTATAATTCACTCCTTAACGGCCTATGTTTACTTGGCGAGTTGGATGATGCTGCAAAGCTTTTCGAGTTGATAAGAGATAAGGGCATTAAGCTTGATGTTACTAGCTACAATATAATGATGAATGGATACTTCAAGAATCATAGGGCAGATGAAGCTGTCTGGCTTTTTCAGGAACTGAAAGATAAGGGATTCAGGCCCTCATCAGCTACCTACAACACACTCATTGGAGGACTTTGCAAGGCAAGAAGATTAGGAAATGCCAAAAGAGCATTTGAAGAGATGCAGTCTCTTGGGACCCCTCCTGACTTGCATACATATGGTATTATGTTGAATGGCCTCTGCAAAAATGGGCTAATGGAGGAAGCTTTGGATTTATTTTCATGCTTGAGAAATTCTGATCTCAAATACGGGGTTGAAGTTTTCAACATAATCATTGGTGGGTTGTGCAGAGCTGGTAAATTGGACGAAGCTAGGGAACAACTTAATGAAATAGTAAAAGCGGGATTAGTACCTGATATTTTCACTTACAATACGTTCATTAATTGGTACTGCAAGAAAGAGATGCATTCTGAAGCAATCATGTTTCTTCAAAAAAATGGAAGAAGGGGGTTGCTCCCCGGACTCCATTTCCTACAATATCATCATTCAGGAGCTTCTTCAAGCAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_252739.p1 GENE.R_Transcript_252739~~R_Transcript_252739.p1 ORF type:5prime_partial len:626 (+),score=114.33,PPR_2|PF13041.2|3.6e-07,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|8.3e-14,PPR_2|PF13041.2|3.2e-16,PPR_2|PF13041.2|6.8e-14,PPR_2|PF13041.2|5.3e-08,PPR_2|PF13041.2|1.6e-17,PPR_2|PF13041.2|8.8e-18,PPR_2|PF13041.2|9e-10,PPR_2|PF13041.2|5.7e-16,PPR_2|PF13041.2|3.2e-16,PPR_2|PF13041.2|0.0093,PPR_2|PF13041.2|2.4e-12,PPR_2|PF13041.2|2.4e-06,PPR_1|PF12854.3|73,PPR_1|PF12854.3|0.98,PPR_1|PF12854.3|2.5e-10,PPR_1|PF12854.3|2.6e-05,PPR_1|PF12854.3|1.5e-13,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|2.2e-09,PPR_1|PF12854.3|4.8e-10,PPR_1|PF12854.3|1.2e-07,PPR_1|PF12854.3|2.2e-11,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|9.2e-10,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|9.2e-07,PPR_1|PF12854.3|4.9e-07,PPR|PF01535.16|1.9,PPR|PF01535.16|0.57,PPR|PF01535.16|0.00021,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|4.1e-09,PPR|PF01535.16|2.4e-07,PPR|PF01535.16|2.4e-07,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|4.4e-06,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|8.1e-08,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|2.8e-07,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|0.001,PPR_3|PF13812.2|4.7e+03,PPR_3|PF13812.2|4.8,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|0.69,PPR_3|PF13812.2|8.1e-05,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.00042,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|0.0072,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.0078,PPR_3|PF13812.2|0.066,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|2.3e+03,DUF3368|PF11848.4|5.1e+03,DUF3368|PF11848.4|18,DUF3368|PF11848.4|18,DUF3368|PF11848.4|2.4,DUF3368|PF11848.4|1.3e+02 R_Transcript_252739:1-1878(+)
KTYPHLQMQGLKAGIPSSTSKTSLIPLSSLFSNPSSSSHVLPSANPRPAKIELHIRAQSKLGKLTLHDAIKYFDHLIYLQPFPTIDTFNHLLGSLAKMGHHQDVFLLYKKLNFVGLRADLYTLNILINCCCHLRCMGCGFGVLGQVLKWGFVPDSVTVKTIVKGLCQEGRVFDALQVFDDMSEWGAQKEAVAYGMLISGLCKHGEMGLALELHRKMVKSGNCKPNVVTYSAIIDSFCKSGLMNEALGVFKEMLGAGITPDVVVCSSLIKGLCGFGLLEEAKKLFDEMITRGISADVVVCSSLIKGLCGFGLLEEAKKLFDEMITRGISADVVAYNCLLHGFCQGGRWKQAVRIFKQMMRRGTLPDLVTFTMMIDYLCKLGKVGEASHLFKLMIEQGLEPNVYTYNSLLNGLCLLGELDDAAKLFELIRDKGIKLDVTSYNIMMNGYFKNHRADEAVWLFQELKDKGFRPSSATYNTLIGGLCKARRLGNAKRAFEEMQSLGTPPDLHTYGIMLNGLCKNGLMEEALDLFSCLRNSDLKYGVEVFNIIIGGLCRAGKLDEAREQLNEIVKAGLVPDIFTYNTFINWYCKKEMHSEAIMFLQKNGRRGLLPGLHFLQYHHSGASSSK*

Click here to download the sequence:
Link to NCBI Protein BLAST