Transcript Information: R_Transcript_253158.p1


Annotated TAIR IDAT5G42905.1
Annotated Gene NamePolynucleotidyl transferase, ribonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:17201414-17202323 | Reverse length=258
E-Value1E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.59271607528238
Replicate 20.30990849322949
Replicate 30.32120148658811
Condition 2: 8 Hour
Replicate 10.54212247115672
Replicate 20.97364725360144
Replicate 31.2324340790226
Condition 3: 24 Hour
Replicate 10.45746184143765
Replicate 20.43947748342848
Replicate 30.80766437959031


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_253158.p1 GENE.R_Transcript_253158~~R_Transcript_253158.p1 ORF type:complete len:1355 (+),score=166.84,RVT_1|PF00078.23|1.1e-42,RVT_3|PF13456.2|3.7e+03,RVT_3|PF13456.2|1.2e-15,zf-RVT|PF13966.2|2.5e-13,Exo_endo_phos|PF03372.19|1e-12,Exo_endo_phos|PF03372.19|5.4e+03,Exo_endo_phos_2|PF14529.2|3.8e-06,Exo_endo_phos_2|PF14529.2|2.2e+03 R_Transcript_253158:505-4569(+)
ATGGATAGGTTCCCTAATTTTCTATCATCACACAAGCCAATCAAGTTTCTTGTGTGGAATTGCCAAGGCGCAGCAAATAGAAGTTTTCTACGATGCCTTAGGGAGTTCATTCGCCAGCATGACCCAGCAGTTCTTGTACTGGTTGAGACCTGGGTTAGTGGTAATAAAGCCGACGAAGTTTGTAAGGCCATTAATTTCTCCGGTTGCTTTCGAGTTGAGGCACAGGGGTTCAGCGGTGGTATTTGGGTCCTCTGGCGGACCGAGGAAGTTTCTGTCCAACTTCTATCATCTTCATCTCAATATGCTAATGTGCTTATTTCTAGACGACATGAGCCGACATGGATGTTCTCTGCCATATATGGCAGTCCCGTGGAGAATACTCGGGAGCAATTATGGAACGAGCTCATGGACCTTGCTTCTTCTCACTCTTATCCTTGGATGCTAGCTGGAGACTTTAATGCCATTGCTAGTCCGGAGGAGAAGCATGGAGGGGCAAATAATGGCCAACGTCGGTGTGCCCGCTTTGCCCAATGGATAAATGATATGCAGCTTATTGATCTGGGTTTTTCGGGGCCTCGATTCACCTGGAGTCGGGGTACTAACGAACGGACTCGCGTGCAAGAACGGCTCGATCGGGCGCTCTGTAACTCTCACTGGCGGCATATGTTTCCTGAGGCCACTATCAGACATCTTCCCACCATCAGGTCTGATCATTGCCCCCTGCTGATAAATACACATGGAGGAATCCCAGCAACTCGGGCCCTTCGCCCTTTCAGGTTCCAAGCTGCATGGCTGCTTCATGATGAGTTTGATGGAGTGGTGAGGCGTTCGTGGAATAGTTCAGCTCCTCTGCCCCATGAAATACAGAGGCTTGAGCACACTCTCCAAAACTGGAATGTCACCTCGTTTGGCAATATTTTCAAGAATAAACGAAGACTTTGGGCCCGCCTAGATGGTATCCAACGCGCCCTCGCTGAGGGGTTTAAGCCCCATCTCCTCTCACTGGAGCGACAACTTCACCAGGAGTTAGAAGCAGTGCTCGAGCAAGAGGAAGTGATGGCCTACCAAAAAGCACGGTATGAACGAATTAAATTTGGTGATAGGAATACATCGTTCTTTCATACCATGACCCTTATTCGAAGACGGAAAAACAAGGTGGAGGGCCTCCTAAATGACCAAGATGAGTGGGTTTGGGACCCAGCCCAACTATGTAGTATGGCAGTTGATTTTTACAGGAAACTATACCAGAAGGAGGATACGCCCCATTTGAATGTACTTCCTAAGCTCTGTTTTCCAGTTTTATCTCAGGATGTGTTAGATCCCCTGTTTCAACCTTATTCCCCTGAGGAGATCAAGAAGGCCCTCTTTGACATGGCTCCCCATAAAGCTCCTGGGCCCGATGGATTTCATGCAGTGTTCTTTCAAAAGATGTGGGATGTGGTGGGGATTTCCATATGTGAGTTTGCACTTGAATTCTTCAGGCTCAATCACTTACCCGAAGGAATGAACGACACTCTCTTAGTCCTCATTCCCAAGGTTCCTGACCCCGAAAGACTCACGCAAATGAGACCTATCTCTTTGTGCAACGTGACTTACAAGATACTCACTAAGGTGCTGGCAAATCGTATTAAAGGCATTCTCCCAAAGCTAATATCTCCAACTCAAGCAAGTTTTGTTCCAGGACGACAAATATCGGACAACATTGTGATAACCCAAGAGGTGATTCATGCAATGAAGAGGAGAACAACTGGAGCTGGCTGGATGGCGATAAAAATTGATCTCGAGAAGGCCTATGACCGACTCAAGTGGGAGTTTATCTCTGATACGCTTCTGGAACTCCCTTTTCCAGTAAATATGGTTGGAGCCATTATGGCATCTGTTCAAGGCATGCGAATGCGGCTGCTATGGAATGGTGAAAAGACTGATGCATTTGAGCCCACGAGAGGCATACGCCAAGGAGACCCCCTCTCTCCTTATCTCTTTGTCCTCTGCATGGAGCGGTTAGCCCATCGTATTCAAATGGCAGTGGATGACAAGAAATGGAAGACAATTCGCCTCTCACGAAAATCGCCGCCGCTTAGCCATCTTTTCTTTGCTGATGATCTTATTCTTTTTGCCGAAGCCACTCTAGATCAAGCGAATGTAATCCTTAAATGTCTTGAGGATTTTTGTATTTCCTCAGGGCAGAGAGTGAATAAGCAAAAGTCGGCTGTTTATTTTTCTAAAGGAGTGCCGGCACATATGCAACAACTTGTGAGTGAAGATCTGGGTATTCCCAAAACTGATAATTTGGGAAATTATCTTGGTGTTCCAATCCTACATAATAGAGTCGGGAAGAACTCGTACAAGCACATCATTGATAAGGTGAACAAGCGTTTGGCGGGATGGAAGGCGCAACATCTTAGCTTTGCGGGACGACTCACACTGGTGAAATCTGTGACTTCCACCATTCCCAATCATGTGATGCAGACAGTACATCTTCCAGTCTCGGTTTGCAGCCAGCTAGATCAGAAGAATCGCAATTTTTTATGGGGGGATACAGAGGACAAGAAGAAGCCTCATTTAGTCAACTGGGACCAGGTTTGTCGACCAAAATCTGTGGGTGGCCTAGGTATTCGCTCTGCACGTCAAGCCAACACTGCTTTGCTCTCAAAACTGGGATGGAGACTATTAAAGGAACCCGAGGCACTTTGGTCACGAGTACTCAAGGCCAAGTATGGTGGGGATCGTAGTGGAATAAATATATTCAAACCGATCGCGGGGGCTTCGCCGGCTTGGAGGGGCTTAAATAAGTGTGCTCCAGTTCTACAACAAGGAATGGGGTGGAATGTTACCAATGGCAGCACTGTTCGTTTCTGGCTTGATAATTGGCTGGGTCCAGGTAACCTTCTATCGCAAGCTAAGTGTGAGATTGGTGAAGAAGAACTCCAGAGCAACGTAGCAGACTACTGGGACGAGCCTCAAGGATGGAAATGGGAGGAATTCAGCTCCAAACTCCCTGCCATTACCCTGCTAAAAATCGCAGCCATTCAACTTAGACCGCAGTCCCCTATATCAGATAGTATTGTATGGCAACGAAGTACGAAGGGGTGTTTCTCAACCTCCTCTGCTTTTGATATTTTCAGGCCTAAAGAAAAAGACGTGGTGGATCGCATTTGGAAGAGTATATGGGATGTATCATGCCCAGAAAGGTTCCGCACCTTTGCGTGGCTTGTGGCCCATGATAGGATACTCGCCAATGCTACTCGCTGCTATCGGGTTATGACGGACTCCCCCGCATGCACCTATTGTGATGGCCATTGGGAGGATACTCTCCATGTCTTACGTAACTGTTTTGCAGCCTCGTCCATCTGGAACAAGTTGGTAGTGCCGAGTGCTCGAATGGATTTCTATACTTGGAATCTAAGAGATTGGCTCTATAAGAATTGCACTTCAAACTTGGGGGTTAATTCTTCATGGGATTGGCCGAGAGTCTTCCTAACTACAATGTGGTTCATTTGGAGATGGCGCTGCTACAGATGTTTTGGGGGGCACATGCGCATTCCCTTCAACCAAATTAGCTTCCTGCACAAGCAATTCCAAGAAATTACTAGAGCACTCGATGAGGATGACTGTCATCAAGGACCTCCCAAAGTCTTGACCTTCATTCGTTGGCAGTACCCACTACCCCCGTGGGTGAAACTAAATACAGATGGTGCAGCGAAAGGCAATCCAGGTACGGCAAGTGCAGGAGGGGTCATTAGAGACTCTTTGGGTCAATGGGTTCAAGGTTTTTCCCACCACATTGGTGTGTGTACTTCCGTGGCTGCTGAATTATGGGGTGTCTACACGGGGCTAAAGATGGCATGGGATATGGGCTTCAAGAAAGTCATTCTAGAAGTGGATTCCATGATAGTCAGAAGCGTTATCTTGGAAGATATTGACTGGTGTGGTCCTAATGCCAACCTTATTGCGCTCTGTCAACAAGCGCTTGGAAGAGAATGGGAGGTGCAAGTCGACCATGTCTATCGAGAAGCCAATGGTGTAGCAGATGCACTTGCAAATAAAGCTTTGGAGTTGGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_253158.p1 GENE.R_Transcript_253158~~R_Transcript_253158.p1 ORF type:complete len:1355 (+),score=166.84,RVT_1|PF00078.23|1.1e-42,RVT_3|PF13456.2|3.7e+03,RVT_3|PF13456.2|1.2e-15,zf-RVT|PF13966.2|2.5e-13,Exo_endo_phos|PF03372.19|1e-12,Exo_endo_phos|PF03372.19|5.4e+03,Exo_endo_phos_2|PF14529.2|3.8e-06,Exo_endo_phos_2|PF14529.2|2.2e+03 R_Transcript_253158:505-4569(+)
MDRFPNFLSSHKPIKFLVWNCQGAANRSFLRCLREFIRQHDPAVLVLVETWVSGNKADEVCKAINFSGCFRVEAQGFSGGIWVLWRTEEVSVQLLSSSSQYANVLISRRHEPTWMFSAIYGSPVENTREQLWNELMDLASSHSYPWMLAGDFNAIASPEEKHGGANNGQRRCARFAQWINDMQLIDLGFSGPRFTWSRGTNERTRVQERLDRALCNSHWRHMFPEATIRHLPTIRSDHCPLLINTHGGIPATRALRPFRFQAAWLLHDEFDGVVRRSWNSSAPLPHEIQRLEHTLQNWNVTSFGNIFKNKRRLWARLDGIQRALAEGFKPHLLSLERQLHQELEAVLEQEEVMAYQKARYERIKFGDRNTSFFHTMTLIRRRKNKVEGLLNDQDEWVWDPAQLCSMAVDFYRKLYQKEDTPHLNVLPKLCFPVLSQDVLDPLFQPYSPEEIKKALFDMAPHKAPGPDGFHAVFFQKMWDVVGISICEFALEFFRLNHLPEGMNDTLLVLIPKVPDPERLTQMRPISLCNVTYKILTKVLANRIKGILPKLISPTQASFVPGRQISDNIVITQEVIHAMKRRTTGAGWMAIKIDLEKAYDRLKWEFISDTLLELPFPVNMVGAIMASVQGMRMRLLWNGEKTDAFEPTRGIRQGDPLSPYLFVLCMERLAHRIQMAVDDKKWKTIRLSRKSPPLSHLFFADDLILFAEATLDQANVILKCLEDFCISSGQRVNKQKSAVYFSKGVPAHMQQLVSEDLGIPKTDNLGNYLGVPILHNRVGKNSYKHIIDKVNKRLAGWKAQHLSFAGRLTLVKSVTSTIPNHVMQTVHLPVSVCSQLDQKNRNFLWGDTEDKKKPHLVNWDQVCRPKSVGGLGIRSARQANTALLSKLGWRLLKEPEALWSRVLKAKYGGDRSGINIFKPIAGASPAWRGLNKCAPVLQQGMGWNVTNGSTVRFWLDNWLGPGNLLSQAKCEIGEEELQSNVADYWDEPQGWKWEEFSSKLPAITLLKIAAIQLRPQSPISDSIVWQRSTKGCFSTSSAFDIFRPKEKDVVDRIWKSIWDVSCPERFRTFAWLVAHDRILANATRCYRVMTDSPACTYCDGHWEDTLHVLRNCFAASSIWNKLVVPSARMDFYTWNLRDWLYKNCTSNLGVNSSWDWPRVFLTTMWFIWRWRCYRCFGGHMRIPFNQISFLHKQFQEITRALDEDDCHQGPPKVLTFIRWQYPLPPWVKLNTDGAAKGNPGTASAGGVIRDSLGQWVQGFSHHIGVCTSVAAELWGVYTGLKMAWDMGFKKVILEVDSMIVRSVILEDIDWCGPNANLIALCQQALGREWEVQVDHVYREANGVADALANKALELE*

Click here to download the sequence:
Link to NCBI Protein BLAST