Transcript Information: R_Transcript_253211.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12333081726161
Replicate 20.42560068411415
Replicate 30.15477525402806
Condition 2: 8 Hour
Replicate 10.16544503342733
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.62048127642443
Replicate 20.14902201953093
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_253211.p2 GENE.R_Transcript_253211~~R_Transcript_253211.p2 ORF type:complete len:148 (+),score=22.80,UBN2_3|PF14244.2|1.4e-31 R_Transcript_253211:847-1290(+)
ATGGCCGCCGAAGCAATTCCTGCGCCTGCAACAATTAATCATGCGAATCCTCTTTTTCTTCATGCTTCAGATCATCCACTGGTTTCCAAAGTCTTCGATGGTTCCGGTTTTGGTGCTTGGAAGAAGTCCTTTAGCATTGCGCTTTCAGCTAAAAACAAGCTAGGTTTTGTTACTGGAAAGGTTCAAAAACCTCCGTCGTCTTCACCACAGTTTGAGTTCTGGCAAAGATGCAATGATATGGTTACGGCATGGATCCTGAATGTTTTGTCCAGAGAAATTGCTGAGAGTGTCATCTATTCTGATTCTGCGCAAGAAATTTGGGAAGAACTCAATGAAAGATATGGTCAGGCAACAGGACCAAATTGTATCAGCTTCAAAAGGAAATTTGCTCTATGGCTCAAGACAGTAACAAACTATAACTTAATATTAACAGGTTTCCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_253211.p2 GENE.R_Transcript_253211~~R_Transcript_253211.p2 ORF type:complete len:148 (+),score=22.80,UBN2_3|PF14244.2|1.4e-31 R_Transcript_253211:847-1290(+)
MAAEAIPAPATINHANPLFLHASDHPLVSKVFDGSGFGAWKKSFSIALSAKNKLGFVTGKVQKPPSSSPQFEFWQRCNDMVTAWILNVLSREIAESVIYSDSAQEIWEELNERYGQATGPNCISFKRKFALWLKTVTNYNLILTGFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST