Transcript Information: R_Transcript_253455.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeHomolog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value1E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.85944434988586
Replicate 21.0592304021675
Replicate 30.97584756575537
Condition 2: 8 Hour
Replicate 10.74116407351527
Replicate 20.50136506370371
Replicate 30.6918775348578
Condition 3: 24 Hour
Replicate 10.64343630122489
Replicate 20.89012255612195
Replicate 30.80974692227311


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_253455.p1 GENE.R_Transcript_253455~~R_Transcript_253455.p1 ORF type:complete len:892 (+),score=232.75,KIP1|PF07765.8|5.4e-09,KIP1|PF07765.8|1.6e+04,KIP1|PF07765.8|1.2e+03,KIP1|PF07765.8|62,KIP1|PF07765.8|1.6e+03,KIP1|PF07765.8|68,KIP1|PF07765.8|2.1e+03,KIP1|PF07765.8|1.6e+03,KIP1|PF07765.8|3.3e+02,KIP1|PF07765.8|3.3e+03,KIP1|PF07765.8|1.1e+03,KIP1|PF07765.8|6.4e+02,Tropomyosin_1|PF12718.3|1.4e+03,Tropomyosin_1|PF12718.3|1.6e+04,Tropomyosin_1|PF12718.3|1.6e+04,Tropomyosin_1|PF12718.3|12,Tropomyosin_1|PF12718.3|2.3e-06,Tropomyosin_1|PF12718.3|1.2e+02,Tropomyosin_1|PF12718.3|4.4e+03,Tropomyosin_1|PF12718.3|42,Tropomyosin_1|PF12718.3|4.6e+03,Tropomyosin_1|PF12718.3|3e+03 R_Transcript_253455:132-2807(+)
ATGTTCATTTCAGAGATCGAGAACAAGTTACCAAAGATTTTAAAGCTCGTCAAAGAGAGACGCCAGAACAGGAAGAATCGGAATGCAGAAGCTACCTTGAGAAAAGAATCAGAACTCATAGAATTGATAGAGGACTTCCACAAACAATATCAATTTGTTTATGACCAGTACGATCATCTCAAAGGACAACTATCAAAGACTGTTAATGGCACAAAAGAAGATGAGGACTACTTCACAGCCACCTCGAGTTCAGATTCAGACTCGGAGAAAGAGGTAGGCAGTGAAGATACTGACCACCTGAACGACAATGGGTTCCACAAACATGAACATGAACGGGACCAAGAGCTCAATGAACTGAAGCAAAAGCTAGCAGAATTAGCCCGAGAAAGAGAAGCATTGAGCTCGGAGTACATGGAAGCAACAAAAAAAGCACAACAGAGTGAGAAAATGCTGCAGAAATTGCAGGAAGAATCGAGACTGTTGAAAGAGAAAATGGTGGAGGAGCGAGAACTTCTGTCGCTTGCTCAAATGTATAGGGTTCATCAGAAGGAAGCTTCATCTTTGATCAAGGAATTAGAATCGGAGCTTACTTCCTTGAATCTTGGGTTGGCTTCCTTGTGCACTGACAAACAGGTTTTGGAAAATCAACAAGAGGAGACCAAAAACCTGCAAGATCGGGTTTCTAAGCTTGAGAAGATTGAGAAAGAGATGGAGGCAGAGCTTAATGCACTCATAAATGGGGCTGATAATAAGCTTGAAAATGGTTCAGTTTCTGAGGGGTCGAAAATTAAAGGATTGATGGAACAAATGAGCAATCTGAAACAGAATTTGAATTGTTTGAGTGCTGAAAAAGGTGATTCCCAAAACAATGGCTCCACCTTGCATGAGAACCTATCAGATCAGGTGAACAAAATGAAGCGCGATCTAGGGTCCATACGGAAGAAGAACACTGAATTGGAATCGAAACTAAAGAAAAATGCTCGCGAAAATTTAGATTTCTTGTCACAGATAGAGAATCTGAAGAAGGAACTAACCAGCAAGGATCTAGAGCTAGATAAGATTCAAAAAGATAAAGACGAATCACTAGCGAGAATGAAGAAGCTCAAAGTAGAGCTGCAAAATACAAGCAGCAGGAGGAATGAAATTGAGAAGCAAAGAGTAGGGAAAGAGCAGGAGAATAGTCAGCTAAAACAGGAGATAGAATCATTGCAAGGAAAGATGGCCAAAATGGAGAAGACACTAAAAGAAAGAGAGGATCAATTTTCCGGACTACAAAAGAGGCTTGAGAACGAAGATCAAGAAGACAAATCTGCGCAAATAGTGGCCCTGACATCACAAATAAACCATCTGGAGCAGGAGATTGAATCAAAGAACGAGTTAGAAAGGCAAATAAAGATTAAGAATCAGAAGATCAATAAACTTATCGAAGAGAAAGAATTGCTTCAGGGGAGGATATCAGAGGTGGAGAAGAAGTTAGAAGATAGACGGGGTGAGTTCTCTAATCTGCAAAACCAAATGTCTACTCAAATTGTGGCCTTAACTAAAGAGATTAGTCAGTTACAGCAAGAAACTGATGTGAAACGTAAACTTGACCAGCAAATTAATTCTCAAGACAAAGAGATTAGTCAGCTAGGGGAAGAAAAAGAAAGCCTACAAGCAAAGATATTGGAGCTTGAAATTACACTAACTGAAAGAGAAGACCGGATTGATGCTTTTCAGAGGAGAATCCAACTTGGGGATAATGAAAAATCTGCATTATCAGTTCAGATCAATAATCTGCAGAAAGAAATAAGTGCTGAGAAACAAAAGGCTAAGGAAAGATTAGCCCAGTTTGAGAACCAGAATTCTGAGCTAACAAATAAGATCTCAGATCAACAAAAGATTCTAAAACAACAAGAGGATACAATCAACAAGTTACGCGAGGACTGTAAGCTTGTTAAAGGTCGATTTCTGCAGGCTGCTGACAGAAAGATGGATGAGGTGGCAGAAGAATTCAGGAAAAAATTTGAAGATAAGCTCCGAATATTAAGCCAGAGAATCCGAGTGGCAGAGCAATTGCATGTAGAGAATAAAGACAGCTACAAGAGGCTACAAGAACGATGTGAGCAAGAACATCCAGGCCTTGAGAAAAAGCTCTCTGACTTAATGTCATCGAATAAGGCTGACCTGTGTAAGATTGCAGAGACAGTTGAGGAAATGATGAAGGGAATGGAAAATGTGGTGAGTAACCTGGAGAGCAAGGAAGGGAGTTTGAGTCAGAGAATATCAAGAGTGTCTGAAGAGATTCAGTTGGCTAAGAATTGGGTCCGATGGACAATAGATGAAATGAAGCCTTGGAAAAATGAACCTACAACAAGCTCACCATTTGCACCAGCAGTTGATGAAAAAGAGCAAGATAAAATCCTGAAAGAAAAGTTAAAGAGGTTAGAGATAAAAGTGAACAAAGAGAAAAGTGACAAGCTGAGGCTAATGAGAGGAATGTATGAGCTTCAGAAGAAAGTAGCTGAGCTAGAGAAGGTTGTTGCAGAAAAGGATGAAGGATTGTTGAGGCTGGGGAAGGAGAAGATAGAGGCTATAAGACAGCTTTGTATGTGGATTGACTATCATCAACACCGGTTTGATCATCTCAAGGAAATGATGTTAGTGAAAAGATCAAAAACTAGAGGAAGGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_253455.p1 GENE.R_Transcript_253455~~R_Transcript_253455.p1 ORF type:complete len:892 (+),score=232.75,KIP1|PF07765.8|5.4e-09,KIP1|PF07765.8|1.6e+04,KIP1|PF07765.8|1.2e+03,KIP1|PF07765.8|62,KIP1|PF07765.8|1.6e+03,KIP1|PF07765.8|68,KIP1|PF07765.8|2.1e+03,KIP1|PF07765.8|1.6e+03,KIP1|PF07765.8|3.3e+02,KIP1|PF07765.8|3.3e+03,KIP1|PF07765.8|1.1e+03,KIP1|PF07765.8|6.4e+02,Tropomyosin_1|PF12718.3|1.4e+03,Tropomyosin_1|PF12718.3|1.6e+04,Tropomyosin_1|PF12718.3|1.6e+04,Tropomyosin_1|PF12718.3|12,Tropomyosin_1|PF12718.3|2.3e-06,Tropomyosin_1|PF12718.3|1.2e+02,Tropomyosin_1|PF12718.3|4.4e+03,Tropomyosin_1|PF12718.3|42,Tropomyosin_1|PF12718.3|4.6e+03,Tropomyosin_1|PF12718.3|3e+03 R_Transcript_253455:132-2807(+)
MFISEIENKLPKILKLVKERRQNRKNRNAEATLRKESELIELIEDFHKQYQFVYDQYDHLKGQLSKTVNGTKEDEDYFTATSSSDSDSEKEVGSEDTDHLNDNGFHKHEHERDQELNELKQKLAELAREREALSSEYMEATKKAQQSEKMLQKLQEESRLLKEKMVEERELLSLAQMYRVHQKEASSLIKELESELTSLNLGLASLCTDKQVLENQQEETKNLQDRVSKLEKIEKEMEAELNALINGADNKLENGSVSEGSKIKGLMEQMSNLKQNLNCLSAEKGDSQNNGSTLHENLSDQVNKMKRDLGSIRKKNTELESKLKKNARENLDFLSQIENLKKELTSKDLELDKIQKDKDESLARMKKLKVELQNTSSRRNEIEKQRVGKEQENSQLKQEIESLQGKMAKMEKTLKEREDQFSGLQKRLENEDQEDKSAQIVALTSQINHLEQEIESKNELERQIKIKNQKINKLIEEKELLQGRISEVEKKLEDRRGEFSNLQNQMSTQIVALTKEISQLQQETDVKRKLDQQINSQDKEISQLGEEKESLQAKILELEITLTEREDRIDAFQRRIQLGDNEKSALSVQINNLQKEISAEKQKAKERLAQFENQNSELTNKISDQQKILKQQEDTINKLREDCKLVKGRFLQAADRKMDEVAEEFRKKFEDKLRILSQRIRVAEQLHVENKDSYKRLQERCEQEHPGLEKKLSDLMSSNKADLCKIAETVEEMMKGMENVVSNLESKEGSLSQRISRVSEEIQLAKNWVRWTIDEMKPWKNEPTTSSPFAPAVDEKEQDKILKEKLKRLEIKVNKEKSDKLRLMRGMYELQKKVAELEKVVAEKDEGLLRLGKEKIEAIRQLCMWIDYHQHRFDHLKEMMLVKRSKTRGRS*

Click here to download the sequence:
Link to NCBI Protein BLAST