Transcript Information: R_Transcript_253679.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value4.4E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.21610129807691
Condition 2: 8 Hour
Replicate 10.23099872591741
Replicate 20.63285514644865
Replicate 30.51372482887888
Condition 3: 24 Hour
Replicate 10
Replicate 20.20806848009979
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_253679.p1 GENE.R_Transcript_253679~~R_Transcript_253679.p1 ORF type:5prime_partial len:106 (+),score=8.40 R_Transcript_253679:2-319(+)
GTGTATCACATGGCCAAACAAGGGCAAGGACAGGTAGCATCATGCAAGAAGTACATACATTTGCTGCAAATATATGGTTGTGCTTATAGATTTGTTTTCATTTGTTTCAACGTGTTGGTATGTGCACCAAGTAATGTTGCTGTGGATCAACTAGTTGAAAAAATAAGTGCGACTGGCTTGAAGGTAATCCGTGCTTTTTATCTCTCAATTTGGCCAAAGAAAGACAATGTTTGTAGGTATATTGCTTGCAAATATGTCACTGATGTCTCATCATATAATATTACCAGACACGATATCTTCCCTGATGTGAACTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_253679.p1 GENE.R_Transcript_253679~~R_Transcript_253679.p1 ORF type:5prime_partial len:106 (+),score=8.40 R_Transcript_253679:2-319(+)
VYHMAKQGQGQVASCKKYIHLLQIYGCAYRFVFICFNVLVCAPSNVAVDQLVEKISATGLKVIRAFYLSIWPKKDNVCRYIACKYVTDVSSYNITRHDIFPDVNY*

Click here to download the sequence:
Link to NCBI Protein BLAST