Transcript Information: R_Transcript_257146.p1


Annotated TAIR IDAT2G43870.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:18166615-18168264 | Reverse length=384
E-Value8E-88
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.29345596390223
Replicate 20.27004887995239
Replicate 30.3682755240539
Condition 2: 8 Hour
Replicate 10.31493073887132
Replicate 20.14379988322306
Replicate 30.17509592238315
Condition 3: 24 Hour
Replicate 10.44291589506825
Replicate 20.49642061811589
Replicate 30.35189235831025


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_257146.p1 GENE.R_Transcript_257146~~R_Transcript_257146.p1 ORF type:3prime_partial len:311 (+),score=41.61,Glyco_hydro_28|PF00295.13|2.4e-52,Pectate_lyase_3|PF12708.3|1.5e-12,Beta_helix|PF13229.2|1.1e-05 R_Transcript_257146:61-930(+)
ATGAGAGCCACAATCACACTTCTTATTATCATCTCATTAACTTTTGTACCAGCTAGGGCCATAACTTATGATGTGACGGCCCTGGGGGCGAGGCCCGACGGACAAACAGACTCATCCAAAGCATTCATTGCTGCTTGGGATGCAGCCTGTGGGTCGTCGGGCCGCCCTGCAATTTATATTCCCGAGGGTCGGTTTCTCATCGGGAACGCCATCACCTTTTTCGGTGGAGGAGGTGGGAGGAAATGCAAGAACAAAGGGGTTAATTTTGTTATCAAAGGTACCCTTGTGGCCCCCGCTGACTACCGAGCCCTTGAGAAGTTTGACACGTGGCTTTCTTTTGTTAATGTCGCCGGAGTGACGATCTCCGGTGGGGTTTTGGATGGTCAGGGCGCCGGGTTGTGGGCTTGTAAGAAGTCCGGTAACGGTACATGTCCTAGTGGTGTTACAAGCCTTAGCTTCACAAAATCAATGAACATTGTGGTCAAAAGATTAACATCAGTGAATAGCCAATTGTACCACATTGTTTTTAATGGGTGTAAGGGTGTCAAAGTGCAAGGGGTGAAACTAACAGCTCCTAGAGCAAGCCCAAACACTGATGGCATTCATGTACAACTTTCAACTGGTGTCACCATTCAAAGTTGTCATATTGGAACTGGTGATGATTGTGTTTCAATTGGTGCCGGCACTACCAACATGTTGATGGACAACATTCTCTGCGGCCCTGGTCATGGTATTAGCATTGGAAGCCTAGCAAAGGATCTGAATGAACCAGGAGTGCAAAATATAACAGTGAAAACTGCAACATTTGTTGGTACTCAAAATGGAGTGCGAATCAAGTCTTGGGGAAGACCAAGTAGTGGTTTTGTGAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_257146.p1 GENE.R_Transcript_257146~~R_Transcript_257146.p1 ORF type:3prime_partial len:311 (+),score=41.61,Glyco_hydro_28|PF00295.13|2.4e-52,Pectate_lyase_3|PF12708.3|1.5e-12,Beta_helix|PF13229.2|1.1e-05 R_Transcript_257146:61-930(+)
MRATITLLIIISLTFVPARAITYDVTALGARPDGQTDSSKAFIAAWDAACGSSGRPAIYIPEGRFLIGNAITFFGGGGGRKCKNKGVNFVIKGTLVAPADYRALEKFDTWLSFVNVAGVTISGGVLDGQGAGLWACKKSGNGTCPSGVTSLSFTKSMNIVVKRLTSVNSQLYHIVFNGCKGVKVQGVKLTAPRASPNTDGIHVQLSTGVTIQSCHIGTGDDCVSIGAGTTNMLMDNILCGPGHGISIGSLAKDLNEPGVQNITVKTATFVGTQNGVRIKSWGRPSSGFVK

Click here to download the sequence:
Link to NCBI Protein BLAST