Transcript Information: R_Transcript_257148.p1


Annotated TAIR IDAT2G43890.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:18176924-18178390 | Forward length=392
E-Value6E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6720269576842
Replicate 20.48083130724347
Replicate 31.3988847386963
Condition 2: 8 Hour
Replicate 10
Replicate 20.17069375451287
Replicate 30.13856191313273
Condition 3: 24 Hour
Replicate 10.87625218426352
Replicate 20.84180377444952
Replicate 30.33416343033431


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_257148.p1 GENE.R_Transcript_257148~~R_Transcript_257148.p1 ORF type:3prime_partial len:131 (+),score=6.80,Pectate_lyase_3|PF12708.3|1.6e-09 R_Transcript_257148:23-412(+)
ATGAAAGCAACACTCCTCGTTCTTCTCATTGTCACACTATCTTTTCTACCAGCACCATTGATTAGGGCCGCCACTTACGATGTGATGGCCCTAGGGGCAAAACCCGACGGACTAACAGACTCATCTCAGGCATTCTTAGCTGCCTGGGATGCCGTCTGTGAGTCGTTGGGCCGCCAAACAATCTACGTCCCATCGGGGCGCTACCTCATTGGAAAACCCATCACTTTTGCCGGGGCAGGAGGTGGGAGATATTGCAAGAACAATGGAGTTACTATCATCATTCGAGGTTCCATTGTGGCCCCAGCTAATTACCTAGCTCTTGGGAACGCCAACATGTGGATTTCTTTTGTTAACGTTAATGGAGTTATCATCACTGGTGGAGTATTTGAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_257148.p1 GENE.R_Transcript_257148~~R_Transcript_257148.p1 ORF type:3prime_partial len:131 (+),score=6.80,Pectate_lyase_3|PF12708.3|1.6e-09 R_Transcript_257148:23-412(+)
MKATLLVLLIVTLSFLPAPLIRAATYDVMALGAKPDGLTDSSQAFLAAWDAVCESLGRQTIYVPSGRYLIGKPITFAGAGGGRYCKNNGVTIIIRGSIVAPANYLALGNANMWISFVNVNGVIITGGVFD

Click here to download the sequence:
Link to NCBI Protein BLAST