Transcript Information: R_Transcript_25738.p1


Annotated TAIR IDAT5G40400.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16166444-16168276 | Forward length=610
E-Value1.1E-165
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9325484983744
Replicate 21.1949114058056
Replicate 32.514154126407
Condition 2: 8 Hour
Replicate 11.6423446001201
Replicate 21.0907747239603
Replicate 32.8039073316045
Condition 3: 24 Hour
Replicate 12.7064081691196
Replicate 22.3758713845541
Replicate 32.2243602324083


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_25738.p1 GENE.R_Transcript_25738~~R_Transcript_25738.p1 ORF type:complete len:492 (+),score=86.92,PPR_2|PF13041.2|4.7e-07,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|9.7e-18,PPR_2|PF13041.2|8.9e-09,PPR_2|PF13041.2|1.9e-14,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|0.00098,PPR_2|PF13041.2|8e-07,PPR_2|PF13041.2|1.4e-06,PPR_2|PF13041.2|41,PPR_2|PF13041.2|3.7,PPR_1|PF12854.3|36,PPR_1|PF12854.3|0.47,PPR_1|PF12854.3|3.3e-07,PPR_1|PF12854.3|4.6e-08,PPR_1|PF12854.3|1.3e-12,PPR_1|PF12854.3|2.8e-10,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|62,PPR_1|PF12854.3|0.08,PPR_1|PF12854.3|0.00044,PPR_1|PF12854.3|0.0026,PPR|PF01535.16|0.0046,PPR|PF01535.16|0.00046,PPR|PF01535.16|0.0012,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|8.4e-09,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|0.086,PPR|PF01535.16|0.25,PPR|PF01535.16|0.59,PPR|PF01535.16|4.4e-05,PPR|PF01535.16|2,PPR|PF01535.16|2.5e+03,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|1.2e-05,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|98,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|4.7e+03 R_Transcript_25738:546-2021(+)
ATGTCCTTATTGAATGAACTAATTCAATCAGAGAACAATAGTAGCAAAAAAGATGTTAACTTTGATGTTTTTAATTGCTTGGTTTCATGTATTGAGGATTGTAACTGGGACCCAGTTGTGTTTGATATGCTTATCAAGGCTTATGTGAAGGTTGATCATATTGAAAAAGGGTATAGGACTTTTAAGAAGATGGTTAAGCTTGGGTTTGTGCCTCATGTTTTGGCTTTTAATTGTTTGTTGAATGGTTTGTCTAAGTTCAGTTGTATTGATAAAAGTTGGGAACTTTACAAGGAGATGTGGCGAATTGGCGTTGTTCCGAATACTTGTACCTTTAATATACTTACCAATGTGTTGTGCAAAGATCATAATGTTGATAAGGTGAACGAGTTTATTGAGAAGATGGAGGAAGAAGGGTTTGAGCCTGATATTGTGACTTATAATACTCTAATTGGACGTTATTGTAGGAATTGTAGGTTGTATGACGCATTTTATTTGTATAAGATTATGTATAGGAGGGGTGTGATGCCGGATTTGTATACATACACCTCGTTGATGAATGGTCTTTGTAAGGTTGGAAGGGTAAAAGAGGCTCGTCAAGTCTTTTGTCGAATGATTCATAGAGGAATGGTTCCAGATGTTGTTGCTTATAACTCCCTTATCCTTGGTTACTGCAAAGAAGGAAGGATGAAAGAAGTTAGGCTCTTAGTTCATGAGATGATTGGAAATGGGATAAAACCTGATGATTTTACCTGTCAGGTTCTTGTGGAAGGGTATGGGAGATCAGGTCGCTGGCATTCATGCTTGAATATGGTTGTTGAGCTACAGAGATTTGGGGTTCCGATTTCTGGTGATACATATAAGTATTTGATTGTTTCTTTGGCTCAGGGGAACCATCCATTTGTAGCTGTTAAGCTCTTAGATAGAATGCTAGAAGAAGGTCACGAGCCTGATGAGGAAATATATGGCAAATTGATTAAATCACTATGTGGTGATGATCACCTAGAAGAGGCATTCCGACATAAAAGTGACATGATTGAAAAGGGTCTTAAGCCCTCGTTAGACATCTATCACAATCTGATTAGCTGCTTGTGCAGATTGAACAGAAGCTCAGAAGCAGAAGACCTGATGCAGGAAATGATCTTACGTGGCCTTAAACCTGACAGCAATATTTGTAGGGAGTTGGTGTTTGGGTACTGTAAAGCACAAAATATTGATAAAGCAGAGTCCTTGCTCATTTCACTGGCTACTGAATATCAGCTGCATGATTTAGATAGTTGTAATTTACTTTTCAAGGCTAGAAGCGAGCATGGTGGTGCTATTGAATTGATGGAGCTACAAGATAAGATGATGAAGTTGGGTTTTGCACCCAATGGTTTGACTTGCAAGTATGTGCTTCATGGTTTGCAGAATGCTATTACAAAGGACAAGGACAATTTTCAAGTCAATAAGAGTAGCACCAGTGAAGCCTTTACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_25738.p1 GENE.R_Transcript_25738~~R_Transcript_25738.p1 ORF type:complete len:492 (+),score=86.92,PPR_2|PF13041.2|4.7e-07,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|9.7e-18,PPR_2|PF13041.2|8.9e-09,PPR_2|PF13041.2|1.9e-14,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|0.00098,PPR_2|PF13041.2|8e-07,PPR_2|PF13041.2|1.4e-06,PPR_2|PF13041.2|41,PPR_2|PF13041.2|3.7,PPR_1|PF12854.3|36,PPR_1|PF12854.3|0.47,PPR_1|PF12854.3|3.3e-07,PPR_1|PF12854.3|4.6e-08,PPR_1|PF12854.3|1.3e-12,PPR_1|PF12854.3|2.8e-10,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|62,PPR_1|PF12854.3|0.08,PPR_1|PF12854.3|0.00044,PPR_1|PF12854.3|0.0026,PPR|PF01535.16|0.0046,PPR|PF01535.16|0.00046,PPR|PF01535.16|0.0012,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|8.4e-09,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|0.086,PPR|PF01535.16|0.25,PPR|PF01535.16|0.59,PPR|PF01535.16|4.4e-05,PPR|PF01535.16|2,PPR|PF01535.16|2.5e+03,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|1.2e-05,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|98,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|4.7e+03 R_Transcript_25738:546-2021(+)
MSLLNELIQSENNSSKKDVNFDVFNCLVSCIEDCNWDPVVFDMLIKAYVKVDHIEKGYRTFKKMVKLGFVPHVLAFNCLLNGLSKFSCIDKSWELYKEMWRIGVVPNTCTFNILTNVLCKDHNVDKVNEFIEKMEEEGFEPDIVTYNTLIGRYCRNCRLYDAFYLYKIMYRRGVMPDLYTYTSLMNGLCKVGRVKEARQVFCRMIHRGMVPDVVAYNSLILGYCKEGRMKEVRLLVHEMIGNGIKPDDFTCQVLVEGYGRSGRWHSCLNMVVELQRFGVPISGDTYKYLIVSLAQGNHPFVAVKLLDRMLEEGHEPDEEIYGKLIKSLCGDDHLEEAFRHKSDMIEKGLKPSLDIYHNLISCLCRLNRSSEAEDLMQEMILRGLKPDSNICRELVFGYCKAQNIDKAESLLISLATEYQLHDLDSCNLLFKARSEHGGAIELMELQDKMMKLGFAPNGLTCKYVLHGLQNAITKDKDNFQVNKSSTSEAFT*

Click here to download the sequence:
Link to NCBI Protein BLAST